Browse Element(s) Details


Os.23101.1.A1_at

Description gb:AK059518.1
DB_XREF= gi:32969536
TID=Os.23101.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23101 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-C03, full insert sequence.
FL= gb:AK059518.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5380011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53760Os.8633.1.S1_a_at11/114+31814841..31819965Kinesin-1, putative, expressed
LOC_Os04g53770OsAffx.14399.1.S1_at11/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53770OsAffx.14399.1.S1_x_at11/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53770Os.13721.1.S1_at9/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53780Os.52654.1.S1_at11/114+31829999..31832630NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53790Os.27639.1.S1_x_at8/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53790OsAffx.8980.1.S1_at6/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53790Os.53731.1.S1_at1/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53800Os.23101.1.A1_at11/114+31840453..31843326NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53810Os.48545.1.S1_at11/114+31844692..31846667NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53820Os.35344.3.S1_x_at10/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820Os.35344.18.S1_x_at8/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820OsAffx.22940.5.S1_at7/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820OsAffx.22940.5.S1_x_at5/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53830Os.17014.1.S1_s_at11/114+31859488..31862821NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53830OsAffx.26592.1.S1_at11/114+31859488..31862821NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53830OsAffx.26592.2.S1_at4/114+31859488..31862821NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53840NANA4+31864328..31864807hypothetical protein
LOC_Os04g53850OsAffx.26592.2.S1_at11/114+31866534..31869210NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53850Os.17014.1.S1_s_at11/114+31866534..31869210NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53850Os.17014.1.S1_at11/114+31866534..31869210NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009718biological_processanthocyanin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009964biological_processnegative regulation of flavonoid biosynthesis
GO:0042406cellular_componentextrinsic to endoplasmic reticulum membrane
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0009985molecular_functiondihydroflavonol(thiole) lyase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016614molecular_functionoxidoreductase activity, acting on CH-OH group of donors
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
GO:0045552molecular_functiondihydrokaempferol 4-reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23101.1.A1_at--813--6171Chr04:31842718..31842742 (25 bp)
GAGGAGATCAACACCCTGAGAATGA
LOC_Os04g53800
Os.23101.1.A1_at--485--1471Chr04:31842736..31842760 (25 bp)
AGAATGATTGACCAGTACTCCGGCG
LOC_Os04g53800
Os.23101.1.A1_at--382--8311Chr04:31842761..31842785 (25 bp)
GGCTGAAGCTGGTTCACGTCGACGA
LOC_Os04g53800
Os.23101.1.A1_at--611--2191Chr04:31842914..31843020 (25 bp)
ACAACGTTGACATCGATGCACTCGG
LOC_Os04g53800
Os.23101.1.A1_at--199--6711Chr04:31843081..31843105 (25 bp)
GTTCGAGTTCATGTACAAGACGGTG
LOC_Os04g53800
Os.23101.1.A1_at--309--711Chr04:31843119..31843143 (25 bp)
ATGATGCCTTCGTGGAGTACGGCAT
LOC_Os04g53800
Os.23101.1.A1_at--399--6991Chr04:31843135..31843159 (25 bp)
GTACGGCATGGCACTCGGGATTCTG
LOC_Os04g53800
Os.23101.1.A1_at--510--7671Chr04:31843151..31843175 (25 bp)
GGGATTCTGCACTACTGACGCCGAC
LOC_Os04g53800
Os.23101.1.A1_at--571--10611Chr04:31843198..31843222 (25 bp)
TTCGCAACCAAACGGCTCTTGCAAA
LOC_Os04g53800
Os.23101.1.A1_at--192--211Chr04:31843249..31843273 (25 bp)
ATTTGTTCCCATCCGCTTTTATGAA
LOC_Os04g53800
Os.23101.1.A1_at--380--7231Chr04:31843278..31843302 (25 bp)
GTGCCTATTGACACGTCAAACTGTT
LOC_Os04g53800
Target Sequence 
GAGGAGATCAACACCCTGAGAATGATTGACCAGTACTCCGGCGGGCTGAAGCTGGTTCACGTCGACGACCTCTGCCGCGC
CGAGATATTCCTCGCCGAGAAAGCGTCGCCGTCGCCGTCGGGGAGGTACATCTGCTGCGCCCTCAACACCACCATGCGGC
AGATCGCCCGTTCCCTGGCCGCCAAATACCCGCACCACAACGTTGACATCGATGCACTCGGCGGCGGCCTCCCTGAGAAG
CCGACGATCCTCCTCTCGTCGGAGAAGCTGACCAGTGAAGGGTTCGAGTTCATGTACAAGACGGTGGATGAGATGTACGA
TGATGCCTTCGTGGAGTACGGCATGGCACTCGGGATTCTGCACTACTGACGCCGACGACAATGCTGTTACTACCCAGCTT
CGCAACCAAACGGCTCTTGCAAAAATAAGTATGTGTAAAACAGCAGTGAATTTGTTCCCATCCGCTTTTATGAAAAACGT
GCCTATTGACACGTCAAACTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23101.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis