Browse Element(s) Details


Os.17014.1.S1_s_at

Description gb:AK067411.1
DB_XREF= gi:32977429
TID=Os.17014.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.17014 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013104E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013104E10, full insert sequence.
FL= gb:AK067411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5383011/11NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g5385011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53790Os.27639.1.S1_x_at8/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53790OsAffx.8980.1.S1_at6/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53790Os.53731.1.S1_at1/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53800Os.23101.1.A1_at11/114+31840453..31843326NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53810Os.48545.1.S1_at11/114+31844692..31846667NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53820Os.35344.3.S1_x_at10/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820Os.35344.18.S1_x_at8/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820OsAffx.22940.5.S1_at7/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820OsAffx.22940.5.S1_x_at5/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53830Os.17014.1.S1_s_at11/114+31859488..31862821NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53830OsAffx.26592.1.S1_at11/114+31859488..31862821NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53830OsAffx.26592.2.S1_at4/114+31859488..31862821NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53840NANA4+31864328..31864807hypothetical protein
LOC_Os04g53850OsAffx.26592.2.S1_at11/114+31866534..31869210NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53850Os.17014.1.S1_s_at11/114+31866534..31869210NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53850Os.17014.1.S1_at11/114+31866534..31869210NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53860Os.35386.1.S1_at11/114+31871795..31874009Leucoanthocyanidin reductase, putative, expressed
LOC_Os04g53860OsAffx.23094.1.S1_s_at2/114+31871795..31874009Leucoanthocyanidin reductase, putative, expressed
LOC_Os04g53870OsAffx.22492.1.S1_x_at1/114+31876178..31882333retrotransposon protein, putative, unclassified
LOC_Os04g53870OsAffx.22492.1.S1_at1/114+31876178..31882333retrotransposon protein, putative, unclassified
LOC_Os04g53880Os.31312.5.S1_x_at1/114+31882974..31886999retrotransposon protein, putative, unclassified
LOC_Os04g53880Os.31312.2.S1_x_at1/114+31882974..31886999retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009718biological_processanthocyanin biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009964biological_processnegative regulation of flavonoid biosynthesis
GO:0042406cellular_componentextrinsic to endoplasmic reticulum membrane
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0009985molecular_functiondihydroflavonol(thiole) lyase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
GO:0045552molecular_functiondihydrokaempferol 4-reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17014.1.S1_s_at--801--9072Chr04:31868247..31868572 (25 bp)
TGCTATCCGGTGATGAGACGCATCT
LOC_Os04g53850
Os.17014.1.S1_s_at--353--3972Chr04:31868609..31868633 (25 bp)
CGTGTCGATCGTTCACGTCGACGAC
LOC_Os04g53850
Os.17014.1.S1_s_at--54--4032Chr04:31868674..31868698 (25 bp)
CGTCATTGTCGTCGGCAGAGTCGTC
LOC_Os04g53850
Os.17014.1.S1_s_at--1071--1312Chr04:31868690..31868714 (25 bp)
AGAGTCGTCGGCGAGGTACATCTGC
LOC_Os04g53850
Os.17014.1.S1_s_at--368--1152Chr04:31868692..31868716 (25 bp)
AGTCGTCGGCGAGGTACATCTGCTG
LOC_Os04g53850
Os.17014.1.S1_s_at--295--10512Chr04:31868721..31868745 (25 bp)
TTCAACACCACCGTCTTGGCGCTTG
LOC_Os04g53850
Os.17014.1.S1_s_at--822--6352Chr04:31868900..31868924 (25 bp)
GATGCCTGAGAAACCGAGAGTCTGC
LOC_Os04g53850
Os.17014.1.S1_s_at--315--5552Chr04:31868909..31868933 (25 bp)
GAAACCGAGAGTCTGCTGTTCGTCG
LOC_Os04g53850
Os.17014.1.S1_s_at--1161--2612Chr04:31868911..31868935 (25 bp)
AACCGAGAGTCTGCTGTTCGTCGGA
LOC_Os04g53850
Os.17014.1.S1_s_at--239--1092Chr04:31869012..31869036 (25 bp)
AGGGCCCTGGGAATTCTACCACATT
LOC_Os04g53850
Os.17014.1.S1_s_at--258--8632Chr04:31869019..31869043 (25 bp)
TGGGAATTCTACCACATTGAACGAA
LOC_Os04g53850
Target Sequence 
TGCTATCCGGTGATGAGACGCATCTNCGAAGTCCTGAAGCCCNTGCAGTGGGTCACCGGCTCCGTGTCGATCGTTCACGT
CGACGACCTCTGCCGCGCCGAGATATTCCTCGCCGAGAAGGAGTCATCGTCATTGTCGTCGGCAGAGTCGTCGGCGAGGT
ACATCTGCTGCAGCTTCAACACCACCGTCTTGGCGCTTGCCCGTTTCATGGCCGGAAGGTACCCGCAGTACAACGTCAAA
ACCGACCGCTTCGACGGGATGCCTGAGAAACCGAGAGTCTGCTGTTCGTCGGAGAAGCTGATCAGGGAAGGGTTCGAGTT
CAAGTACACGAATATGGGCGACATACTCGATGACCTTGTAGAGTACGGCAGGGCCCTGGGAATTCTACCACATTGAACGA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17014.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis