Browse Element(s) Details


OsAffx.23094.1.S1_s_at

Description gb:NM_184158.1
DB_XREF= gi:34895407
GEN=P0445D12.12
TID=OsAffx.23094.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0445D12.12 (P0445D12.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0321011/11hypothetical protein
LOC_Os04g538602/11Leucoanthocyanidin reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03170OsAffx.10889.1.S1_x_at11/111+1235425..1239153Seven in absentia protein family protein, expressed
LOC_Os01g03170OsAffx.10889.1.S1_at11/111+1235425..1239153Seven in absentia protein family protein, expressed
LOC_Os01g03180Os.30032.2.S1_x_at11/111+1246683..1248223expressed protein
LOC_Os01g03180Os.30032.1.S1_at11/111+1246683..1248223expressed protein
LOC_Os01g03190Os.31540.1.S1_at11/111+1250830..1252437expressed protein
LOC_Os01g03200NANA1+1258076..1258885retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g03210OsAffx.23094.1.S1_s_at11/111+1261158..1262075hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009718biological_processanthocyanin biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009964biological_processnegative regulation of flavonoid biosynthesis
GO:0042406cellular_componentextrinsic to endoplasmic reticulum membrane
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0009985molecular_functiondihydroflavonol(thiole) lyase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
GO:0045552molecular_functiondihydrokaempferol 4-reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23094.1.S1_s_at--164--4431Chr01:1261469..1261493 (25 bp)
GCCATGGAGGCCTTCGTCTCGTCGA
LOC_Os01g03210
OsAffx.23094.1.S1_s_at--86--9411Chr01:1261482..1261506 (25 bp)
TCGTCTCGTCGACCAAGATCCAGTG
LOC_Os01g03210
OsAffx.23094.1.S1_s_at--1151--8051Chr01:1261530..1261554 (25 bp)
GGAGCTACGTCACCTACTACGCCGT
LOC_Os01g03210
OsAffx.23094.1.S1_s_at--1067--71Chr01:1261651..1261675 (25 bp)
ATTCCTGCCACGTGGACAAGGTCGA
LOC_Os01g03210
OsAffx.23094.1.S1_s_at--264--2232Chr04:31873833..31873852 (20 bp)
ACAAGGTCGAGTACGGCAAGGCCCT
LOC_Os04g53860
OsAffx.23094.1.S1_s_at--176--9372Chr04:31873834..31873944 (25 bp)
TCGAGTACGGCAAGGCCCTGTGTCT
LOC_Os04g53860
OsAffx.23094.1.S1_s_at--850--8671Chr01:1261690..1261714 (25 bp)
TGTGTCTCCGCGTGCCGGCGTCTGA
LOC_Os01g03210
OsAffx.23094.1.S1_s_at--357--6191Chr01:1261743..1261767 (25 bp)
GAGGACAAGCGCGTGTTCCTCCTCG
LOC_Os01g03210
OsAffx.23094.1.S1_s_at--920--1931Chr01:1261830..1261854 (25 bp)
ACGGCGGCGCGGTACAGGTGCAAGA
LOC_Os01g03210
OsAffx.23094.1.S1_s_at--1084--6211Chr01:1261983..1262007 (25 bp)
GAGGCGACGTTCTTGGCCGTGCCAC
LOC_Os01g03210
OsAffx.23094.1.S1_s_at--631--10871Chr01:1261995..1262019 (25 bp)
TTGGCCGTGCCACCCAAGATGCTGC
LOC_Os01g03210
Target Sequence 
GCCATGGAGGCCTTCGTCTCGTCGACCAAGATCCAGTGCCCCTACCAGGCGCACGGCTGCCGGAGCTACGTCACCTACTA
CGCCGTCGACGACCACCAGCGCGCCCCGGCTGCGGCTTCGCCGGCTCTCCTGGAACACCTCGCCGCGGCGCATTCCTGCC
ACGTGGACAAGGTCGAGTACGGCAAGGCCCTGTGTCTCCGCGTGCCGGCGTCTGAGCGGCGGCGGCGCCTGCTCGTCGGG
GAGGAGGACAAGCGCGTGTTCCTCCTCGCCATGGCCGCGGTCGGCGCGGCCAGCGCGGTGACGTTGGTGCGCGTCGCGGC
GAGCGCGGAGACGGCGGCGCGGTACAGGTGCAAGATGTGGGCGAACGCGCCGGCGGCGGCGGCGGCGGCGGTGGCGGGCG
CGGCGAGCGGCAAGGCGGACATGGTCATGGTGGACATGGAGGTGGCGAGCAGCGGCGTGGCGCCCGGCGGCGTCGCCGTG
GAGGAGGCGACGTTCTTGGCCGTGCCACCCAAGATGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23094.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis