Browse Element(s) Details


Os.30032.2.S1_x_at

Description gb:NM_184154.1
DB_XREF= gi:34895399
GEN=P0445D12.7
TID=Os.30032.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.30032 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0445D12.7 (P0445D12.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0445D12.7 (P0445D12.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0318011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03144Os.45486.1.S1_x_at11/111+1219903..1227308ABC-2 type transporter family protein, expressed
LOC_Os01g03144Os.1182.1.S1_x_at11/111+1219903..1227308ABC-2 type transporter family protein, expressed
LOC_Os01g03160Os.6520.1.S1_at11/111+1229295..1233583Core-2/I-Branching enzyme family protein, expressed
LOC_Os01g03170OsAffx.10889.1.S1_x_at11/111+1235425..1239153Seven in absentia protein family protein, expressed
LOC_Os01g03170OsAffx.10889.1.S1_at11/111+1235425..1239153Seven in absentia protein family protein, expressed
LOC_Os01g03180Os.30032.2.S1_x_at11/111+1246683..1248223expressed protein
LOC_Os01g03180Os.30032.1.S1_at11/111+1246683..1248223expressed protein
LOC_Os01g03190Os.31540.1.S1_at11/111+1250830..1252437expressed protein
LOC_Os01g03200NANA1+1258076..1258885retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g03210OsAffx.23094.1.S1_s_at11/111+1261158..1262075hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30032.2.S1_x_at--629--9931Chr01:1247440..1247464 (25 bp)
TACGGCTGCGACAGCTACGTCGTGT
LOC_Os01g03180
Os.30032.2.S1_x_at--253--2151Chr01:1247450..1247474 (25 bp)
ACAGCTACGTCGTGTACGGCGCGGC
LOC_Os01g03180
Os.30032.2.S1_x_at--582--8591Chr01:1247587..1247611 (25 bp)
TGGTCCGTCACGCAGATCAGCTACG
LOC_Os01g03180
Os.30032.2.S1_x_at--1096--5031Chr01:1247598..1247622 (25 bp)
GCAGATCAGCTACGCGAAGCCGTGC
LOC_Os01g03180
Os.30032.2.S1_x_at--74--5831Chr01:1247674..1247698 (25 bp)
GACCGCGCCATGTTCCTGGTGGTGT
LOC_Os01g03180
Os.30032.2.S1_x_at--391--3931Chr01:1247777..1247801 (25 bp)
CGGCGCAGTACAAGTGCAAGCTGTG
LOC_Os01g03180
Os.30032.2.S1_x_at--948--7771Chr01:1247808..1247832 (25 bp)
GGTGCCGACCAACAGCGACAACATG
LOC_Os01g03180
Os.30032.2.S1_x_at--1160--5611Chr01:1247824..1247848 (25 bp)
GACAACATGGTGATGATGACGTCCA
LOC_Os01g03180
Os.30032.2.S1_x_at--912--3211Chr01:1247847..1247871 (25 bp)
CAAGGTGAGGAGCAGCGACCTCTCC
LOC_Os01g03180
Os.30032.2.S1_x_at--501--4491Chr01:1247916..1247940 (25 bp)
GCCGGAGCTGCTTCACGAGGTGTCC
LOC_Os01g03180
Os.30032.2.S1_x_at--634--6371Chr01:1247952..1247976 (25 bp)
GATCCTCAGCATCCGCATCGATCGA
LOC_Os01g03180
Target Sequence 
TACGGCTGCGACAGCTACGTCGTGTACGGCGCGGCCGCCGAGCACCAGCGCGCGTGCCCGTGCGCGCCCTGCTCCTGCCC
GGACCCCGGCTGCGGCTTCCGCGGCTCGCCGGCGGCGCTCCTCGGCCACTTCGCCACCGACCACCCCTGGTCCGTCACGC
AGATCAGCTACGCGAAGCCGTGCAGGCTCGCCGTGCCGCTGCCCCGGCGGTGCCACGTCCTCGTCGGGGAGGACGACCGC
GCCATGTTCCTGGTGGTGTCCCCGTCCCCGTGCGGCGTCGGCGTCGGCGCGGCGGTGTGCGTGGCGTGCGTCCGGGCGAA
CGGCGACGACGCGGCGGCGGCGCAGTACAAGTGCAAGCTGTGGGTGGAGGTGCCGACCAACAGCGACAACATGGTGATGA
TGACGTCCAAGGTGAGGAGCAGCGACCTCTCCGGCGGGTTCCCGGCGGCGGAGCAGGGGATGTTCTTGGTGGTGCCGCCG
GAGCTGCTTCACGAGGTGTCCGGCGAGACGCCGATCCTCAGCATCCGCATCGATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30032.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis