Browse Element(s) Details


Os.6520.1.S1_at

Description gb:AK105432.1
DB_XREF= gi:32990641
TID=Os.6520.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6520 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0445D12.4 (P0445D12.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-F04, full insert sequence.
FL= gb:AK105432.1 gb:AK073465.1 gb:AK069510.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0316011/11Core-2/I-Branching enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03119OsAffx.1737.1.S1_at3/111+1208373..1210915NA
LOC_Os01g03130OsAffx.23070.1.S1_at11/111+1213817..1214896expressed protein
LOC_Os01g03130Os.55272.1.S1_at11/111+1213817..1214896expressed protein
LOC_Os01g03144Os.45486.1.S1_x_at11/111+1219903..1227308ABC-2 type transporter family protein, expressed
LOC_Os01g03144Os.1182.1.S1_x_at11/111+1219903..1227308ABC-2 type transporter family protein, expressed
LOC_Os01g03160Os.6520.1.S1_at11/111+1229295..1233583Core-2/I-Branching enzyme family protein, expressed
LOC_Os01g03170OsAffx.10889.1.S1_x_at11/111+1235425..1239153Seven in absentia protein family protein, expressed
LOC_Os01g03170OsAffx.10889.1.S1_at11/111+1235425..1239153Seven in absentia protein family protein, expressed
LOC_Os01g03180Os.30032.2.S1_x_at11/111+1246683..1248223expressed protein
LOC_Os01g03180Os.30032.1.S1_at11/111+1246683..1248223expressed protein
LOC_Os01g03190Os.31540.1.S1_at11/111+1250830..1252437expressed protein
LOC_Os01g03200NANA1+1258076..1258885retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0008375molecular_functionacetylglucosaminyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.6520.1.S1_at--496--7511Chr01:1233022..1233046 (25 bp)
GTGGTTCAATGATCCATGCTCCCAA
LOC_Os01g03160
Os.6520.1.S1_at--65--9711Chr01:1233057..1233081 (25 bp)
TCAACATTGTAAGACCTGGTCCCCA
LOC_Os01g03160
Os.6520.1.S1_at--47--4351Chr01:1233079..1233103 (25 bp)
CCAGGCTGAGAAGTTCCGCAAACAT
LOC_Os01g03160
Os.6520.1.S1_at--815--4611Chr01:1233170..1233194 (25 bp)
GCGAGATTTCACTTCCCATGTTTGA
LOC_Os01g03160
Os.6520.1.S1_at--201--8311Chr01:1233226..1233250 (25 bp)
GGCTCTTCACGAACTTCAGCAGTTA
LOC_Os01g03160
Os.6520.1.S1_at--1114--5871Chr01:1233260..1233284 (25 bp)
GAGCGAACATTTTTGCACCTGGGTT
LOC_Os01g03160
Os.6520.1.S1_at--234--7471Chr01:1233280..1233304 (25 bp)
GGGTTACAAGCACACGTCCAAAGGT
LOC_Os01g03160
Os.6520.1.S1_at--569--8591Chr01:1233333..1233357 (25 bp)
TGGTAACTGTCATGGCTTCAAGGGC
LOC_Os01g03160
Os.6520.1.S1_at--933--5671Chr01:1233457..1233481 (25 bp)
GACTTGTGCGACTGTTTATAGAACT
LOC_Os01g03160
Os.6520.1.S1_at--576--1971Chr01:1233479..1233503 (25 bp)
ACTGATGGAATTCTGGGTGCTCCCA
LOC_Os01g03160
Os.6520.1.S1_at--360--7711Chr01:1233493..1233517 (25 bp)
GGGTGCTCCCATACAGGATTGAGAA
LOC_Os01g03160
Target Sequence
GTGGTTCAATGATCCATGCTCCCAATGGAGCAATGTCAACATTGTAAGACCTGGTCCCCAGGCTGAGAAGTTCCGCAAAC
ATATGAATCAGATCATAGAGGAATCTGCATCAGGCAACAACTCATGCAAGCAATAGCAGCAATGAAGCGCGAGATTTCAC
TTCCCATGTTTGAAGCGATGAGCTTTTCTCATTTTGCATAGAGGGGCTCTTCACGAACTTCAGCAGTTAACGCTTCCAGA
GCGAACATTTTTGCACCTGGGTTACAAGCACACGTCCAAAGGTGAGATGGGTTTATTCTTTCCAGATTTTTTGGTAACTG
TCATGGCTTCAAGGGCCTCACTGCATAGCGCATACTAGCTTAGTTGGAAGTCAGAGTGCTGATGGTCGGAGCACCAAAGC
TAATAGGCAGTGTAATTATTAGTGATCAGTTGAATGACTTGTGCGACTGTTTATAGAACTGATGGAATTCTGGGTGCTCC
CATACAGGATTGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6520.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis