Browse Element(s) Details


Os.31540.1.S1_at

Description gb:AK107171.1
DB_XREF= gi:32992380
TID=Os.31540.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31540 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0445D12.9 (P0445D12.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-G03, full insert sequence.
FL= gb:AK107171.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0319011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03144Os.45486.1.S1_x_at11/111+1219903..1227308ABC-2 type transporter family protein, expressed
LOC_Os01g03144Os.1182.1.S1_x_at11/111+1219903..1227308ABC-2 type transporter family protein, expressed
LOC_Os01g03160Os.6520.1.S1_at11/111+1229295..1233583Core-2/I-Branching enzyme family protein, expressed
LOC_Os01g03170OsAffx.10889.1.S1_x_at11/111+1235425..1239153Seven in absentia protein family protein, expressed
LOC_Os01g03170OsAffx.10889.1.S1_at11/111+1235425..1239153Seven in absentia protein family protein, expressed
LOC_Os01g03180Os.30032.2.S1_x_at11/111+1246683..1248223expressed protein
LOC_Os01g03180Os.30032.1.S1_at11/111+1246683..1248223expressed protein
LOC_Os01g03190Os.31540.1.S1_at11/111+1250830..1252437expressed protein
LOC_Os01g03200NANA1+1258076..1258885retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g03210OsAffx.23094.1.S1_s_at11/111+1261158..1262075hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007275biological_processdevelopment
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31540.1.S1_at--214--9971Chr01:1251928..1251952 (25 bp)
TACCGCTGCAAGCTCTGGGCGCACG
LOC_Os01g03190
Os.31540.1.S1_at--334--8091Chr01:1251972..1251996 (25 bp)
GGACTTCGTCCACATGGACTCGGCG
LOC_Os01g03190
Os.31540.1.S1_at--409--4491Chr01:1252093..1252117 (25 bp)
GCCGGAACGTCCAAGGAGATGCTCA
LOC_Os01g03190
Os.31540.1.S1_at--462--9611Chr01:1252115..1252139 (25 bp)
TCATCAGGCTCAGCATCAGCATTGA
LOC_Os01g03190
Os.31540.1.S1_at--622--6251Chr01:1252180..1252204 (25 bp)
GATGGTCTACTAGTAATGTCCTAAA
LOC_Os01g03190
Os.31540.1.S1_at--485--8831Chr01:1252209..1252233 (25 bp)
TGATTAGTGCTCTGATGCCGTTCAA
LOC_Os01g03190
Os.31540.1.S1_at--500--9171Chr01:1252224..1252248 (25 bp)
TGCCGTTCAAGTTTAGGTGCTAGTT
LOC_Os01g03190
Os.31540.1.S1_at--1014--4851Chr01:1252242..1252266 (25 bp)
GCTAGTTTCAAGTTCTAACCAGCCA
LOC_Os01g03190
Os.31540.1.S1_at--998--2631Chr01:1252258..1252282 (25 bp)
AACCAGCCATAAGCTTTGCTATTTG
LOC_Os01g03190
Os.31540.1.S1_at--939--9331Chr01:1252343..1252367 (25 bp)
TCGAACTTGTACTTTCCTTCAACCT
LOC_Os01g03190
Os.31540.1.S1_at--1127--9711Chr01:1252361..1252385 (25 bp)
TCAACCTCGTTTTTAATCTTCAATG
LOC_Os01g03190
Target Sequence 
TACCGCTGCAAGCTCTGGGCGCACGCCCCGGGCGGCGGCGCCGCGGACTTCGTCCACATGGACTCGGCGGTGGCGAGCAG
CGCCGCCGCGCCCGGTGGCGAGGTCGCCGTCGACGAGGAGGCCAGGTTCCTGACGGTGCCGCCGTGCTTCCTCCACCTGC
TCGACGCCGGAACGTCCAAGGAGATGCTCATCAGGCTCAGCATCAGCATTGACATTGACATTGACATGTCCTGATCGATC
GACATGAAACATGATGGTCTACTAGTAATGTCCTAAATTCGTGATTAGTGCTCTGATGCCGTTCAAGTTTAGGTGCTAGT
TTCAAGTTCTAACCAGCCATAAGCTTTGCTATTTGGAAGTTTGAACTCTGATGTTCTAAATTATAATTTTCGTAAGGAAA
ACTCGAGTTAAAAATTCGAACTTGTACTTTCCTTCAACCTCGTTTTTAATCTTCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis