Browse Element(s) Details


OsAffx.10889.1.S1_x_at

Description tigr:9629.m00232
TID=OsAffx.10889.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Seven in absentia protein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0317011/11Seven in absentia protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03119OsAffx.1737.1.S1_at3/111+1208373..1210915NA
LOC_Os01g03130OsAffx.23070.1.S1_at11/111+1213817..1214896expressed protein
LOC_Os01g03130Os.55272.1.S1_at11/111+1213817..1214896expressed protein
LOC_Os01g03144Os.45486.1.S1_x_at11/111+1219903..1227308ABC-2 type transporter family protein, expressed
LOC_Os01g03144Os.1182.1.S1_x_at11/111+1219903..1227308ABC-2 type transporter family protein, expressed
LOC_Os01g03160Os.6520.1.S1_at11/111+1229295..1233583Core-2/I-Branching enzyme family protein, expressed
LOC_Os01g03170OsAffx.10889.1.S1_x_at11/111+1235425..1239153Seven in absentia protein family protein, expressed
LOC_Os01g03170OsAffx.10889.1.S1_at11/111+1235425..1239153Seven in absentia protein family protein, expressed
LOC_Os01g03180Os.30032.2.S1_x_at11/111+1246683..1248223expressed protein
LOC_Os01g03180Os.30032.1.S1_at11/111+1246683..1248223expressed protein
LOC_Os01g03190Os.31540.1.S1_at11/111+1250830..1252437expressed protein
LOC_Os01g03200NANA1+1258076..1258885retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g03210OsAffx.23094.1.S1_s_at11/111+1261158..1262075hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007275biological_processdevelopment
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10889.1.S1_x_at--157--4771Chr01:1238561..1238585 (25 bp)
GCTGCAGCAGCTACGTCGTGTACGC
LOC_Os01g03170
OsAffx.10889.1.S1_x_at--668--3371Chr01:1238568..1238592 (25 bp)
CAGCTACGTCGTGTACGCGGGCGTC
LOC_Os01g03170
OsAffx.10889.1.S1_x_at--479--7411Chr01:1238794..1238818 (25 bp)
GTGTTCCTCGTGTCGTCGTGCGCCG
LOC_Os01g03170
OsAffx.10889.1.S1_x_at--121--4531Chr01:1238830..1238854 (25 bp)
GCCGCGGTGTGCGTGGTCTGCGTCA
LOC_Os01g03170
OsAffx.10889.1.S1_x_at--250--7551Chr01:1238887..1238911 (25 bp)
GTGGCGCGGTACAAGTGCAAGTTGT
LOC_Os01g03170
OsAffx.10889.1.S1_x_at--147--8031Chr01:1238916..1238940 (25 bp)
GGAGGTGCCTAGCAACGACGACAAC
LOC_Os01g03170
OsAffx.10889.1.S1_x_at--407--9991Chr01:1238925..1238949 (25 bp)
TAGCAACGACGACAACATGGCCATG
LOC_Os01g03170
OsAffx.10889.1.S1_x_at--203--3271Chr01:1238937..1238961 (25 bp)
CAACATGGCCATGATGACGTCGATG
LOC_Os01g03170
OsAffx.10889.1.S1_x_at--1106--871Chr01:1238941..1238965 (25 bp)
ATGGCCATGATGACGTCGATGGTGA
LOC_Os01g03170
OsAffx.10889.1.S1_x_at--820--3531Chr01:1239066..1239090 (25 bp)
CATCCTCAGCATCCGCATTGATAGA
LOC_Os01g03170
OsAffx.10889.1.S1_x_at--121--3611Chr01:1239081..1239105 (25 bp)
CATTGATAGAGCTGCTGCTGCCACG
LOC_Os01g03170
Target Sequence 
GCTGCAGCAGCTACGTCGTGTACGCGGGCGTCGCCGACCACCAGCGCGCGTGCCCGTGCGCGCCATGCTCCTGCCCGGAG
CCCGGCTGCCGCTTCCGCAGCTCGCCAGCGGCGCTCCCCGGCCACCTCGCCGCCGGCCACTCCTGGCCCGTCGCCGAGAT
CGCCTACGGGAAGCCGCGCAAGCTCGCCGTGCCGCCGCCCGCCCACGTCCTCGTCGGGGAGGCCGACCGCGCCGTGTTCC
TCGTGTCGTCGTGCGCCGTCGGCGCGGGCGCCGCGGTGTGCGTGGTCTGCGTCAGGGCGAACGGCGGCGGCGACAACGCG
GCGGCGGTGGCGCGGTACAAGTGCAAGTTGTGGGTGGAGGTGCCTAGCAACGACGACAACATGGCCATGATGACGTCGAT
GGTGAGGAGCAGCGACCTCGCCGGCGGGTTCCCGGCGGCGGACAAGGGGATGCTGCTGTGGGTGCCGCCGGAGATGCTGC
ACGGCGTGCCCGGCGGCGAGGCGGCCATCCTCAGCATCCGCATTGATAGAGCTGCTGCTGCCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10889.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis