Browse Element(s) Details


OsAffx.1737.1.S1_at

Description gb:NM_184148.1
DB_XREF= gi:34895387
GEN=P0684C01.10
TID=OsAffx.1737.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0684C01.10 (P0684C01.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g031193/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03090Os.1177.1.S1_a_at11/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03090Os.45490.1.S1_x_at9/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03100Os.23963.1.A1_at11/111+1183469..1187815zinc finger family protein, putative, expressed
LOC_Os01g03100Os.30607.1.S1_at10/111+1183469..1187815zinc finger family protein, putative, expressed
LOC_Os01g03110Os.49076.1.S1_at11/111+1195489..1200304expressed protein
LOC_Os01g03119OsAffx.1737.1.S1_at3/111+1208373..1210915NA
LOC_Os01g03130OsAffx.23070.1.S1_at11/111+1213817..1214896expressed protein
LOC_Os01g03130Os.55272.1.S1_at11/111+1213817..1214896expressed protein
LOC_Os01g03144Os.45486.1.S1_x_at11/111+1219903..1227308ABC-2 type transporter family protein, expressed
LOC_Os01g03144Os.1182.1.S1_x_at11/111+1219903..1227308ABC-2 type transporter family protein, expressed
LOC_Os01g03160Os.6520.1.S1_at11/111+1229295..1233583Core-2/I-Branching enzyme family protein, expressed
LOC_Os01g03170OsAffx.10889.1.S1_x_at11/111+1235425..1239153Seven in absentia protein family protein, expressed
LOC_Os01g03170OsAffx.10889.1.S1_at11/111+1235425..1239153Seven in absentia protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1737.1.S1_at--523--7571NONE
GGGCGTCCTAGAGTAAAGCATACTT
NONE
OsAffx.1737.1.S1_at--854--2711Chr01:1209572..1209595 (24 bp)
AAGCATACTTTGGTGACCAGGGCAT
LOC_Os01g03119
OsAffx.1737.1.S1_at--1138--7751Chr01:1209561..1209585 (25 bp)
GGTGACCAGGGCATTTGATTGTGAT
LOC_Os01g03119
OsAffx.1737.1.S1_at--2--2711Chr01:1209497..1209521 (25 bp)
AAGCTAGTAGCAACCACACGATCGA
LOC_Os01g03119
OsAffx.1737.1.S1_at--1066--2151NONE
ACACGATCGATCCTAGCTTGGTTTT
NONE
OsAffx.1737.1.S1_at--1026--10851Chr01:1208269..1208293 (25 bp)
TTGGTTTTGTTTAGCTGACTCTTAC
NONE
OsAffx.1737.1.S1_at--502--4751Chr01:1208256..1208280 (25 bp)
GCTGACTCTTACCAAACAACTTGCT
NONE
OsAffx.1737.1.S1_at--724--4211Chr01:1208188..1208212 (25 bp)
CCCCAAATGCACTGTTCGTAGTTCA
NONE
OsAffx.1737.1.S1_at--35--8811Chr01:1208176..1208200 (25 bp)
TGTTCGTAGTTCACCACTCATCATT
NONE
OsAffx.1737.1.S1_at--154--431Chr01:1208157..1208181 (25 bp)
ATCATTCACTCAGCCAGACAGCTTA
NONE
OsAffx.1737.1.S1_at--801--4411Chr01:1208145..1208169 (25 bp)
GCCAGACAGCTTAAGGATCGGAAAT
NONE
Target Sequence 
GGGCGTCCTAGAGTAAAGCATACTTTGGTGACCAGGGCATTTGATTGTGATCATATACTAATAGAACATGAACAAGACGA
CAAAGATCAAAAGCTAGTAGCAACCACACGATCGATCCTAGCTTGGTTTTGTTTAGCTGACTCTTACCAAACAACTTGCT
TGCAAAAGTTAAAACAAGCTTTAAATCCAAACAAAGCAATGTCCCCCAAATGCACTGTTCGTAGTTCACCACTCATCATT
CACTCAGCCAGACAGCTTAAGGATCGGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis