Browse Element(s) Details


Os.1177.1.S1_a_at

Description gb:AK071475.1
DB_XREF= gi:32981498
TID=Os.1177.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1177 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013160I04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091F21, full insert sequence.
FL= gb:AK071475.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0309011/11SLL2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03030Os.38065.1.S1_at11/111+1152052..1155249alanyl-tRNA synthetase, putative, expressed
LOC_Os01g03040Os.1071.1.S1_at10/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.A1_at3/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.S1_at2/111+1156955..1161421expressed protein
LOC_Os01g03050Os.54619.1.S1_at1/111+1162673..1164673Oxidoreductase NAD-binding domain containing protein, expressed
LOC_Os01g03060Os.12185.1.S1_at11/111+1165450..1167932expressed protein
LOC_Os01g03070Os.28076.2.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S2_at10/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03080Os.56995.1.S1_at11/111+1178119..1178949expressed protein
LOC_Os01g03090Os.1177.1.S1_a_at11/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03090Os.45490.1.S1_x_at9/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03100Os.23963.1.A1_at11/111+1183469..1187815zinc finger family protein, putative, expressed
LOC_Os01g03100Os.30607.1.S1_at10/111+1183469..1187815zinc finger family protein, putative, expressed
LOC_Os01g03110Os.49076.1.S1_at11/111+1195489..1200304expressed protein
LOC_Os01g03119OsAffx.1737.1.S1_at3/111+1208373..1210915NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1177.1.S1_a_at--761--3611Chr01:1182434..1182455 (22 bp)
CTTGGTTGATGATGTGTTAGAGTCA
LOC_Os01g03090
Os.1177.1.S1_a_at--958--6171Chr01:1182464..1182488 (25 bp)
GAGGAGATTTGAACTTGTGATGGAT
LOC_Os01g03090
Os.1177.1.S1_a_at--973--9551Chr01:1183280..1183304 (25 bp)
TCTTTTTCTCCCTAACTTTGCCATC
LOC_Os01g03090
Os.1177.1.S1_a_at--293--4411Chr01:1183299..1183323 (25 bp)
GCCATCCCAGTGTGTATCCCCTTTA
LOC_Os01g03090
Os.1177.1.S1_a_at--963--8651Chr01:1183309..1183333 (25 bp)
TGTGTATCCCCTTTACCCTAGTTCT
LOC_Os01g03090
Os.1177.1.S1_a_at--555--10451Chr01:1183321..1183345 (25 bp)
TTACCCTAGTTCTCTTCGGGTGATA
LOC_Os01g03090
Os.1177.1.S1_a_at--776--6691Chr01:1183329..1183353 (25 bp)
GTTCTCTTCGGGTGATAGTCTACTT
LOC_Os01g03090
Os.1177.1.S1_a_at--551--7711Chr01:1183338..1183362 (25 bp)
GGGTGATAGTCTACTTTGCCAGATA
LOC_Os01g03090
Os.1177.1.S1_a_at--828--3671Chr01:1183351..1183375 (25 bp)
CTTTGCCAGATAGGTTATTCAGTTG
LOC_Os01g03090
Os.1177.1.S1_a_at--835--10211Chr01:1183366..1183390 (25 bp)
TATTCAGTTGTAACGTTGCTTTGTT
LOC_Os01g03090
Os.1177.1.S1_a_at--1145--9571Chr01:1183402..1183426 (25 bp)
TCTTGATGGATGTACTCTTTTGAAA
LOC_Os01g03090
Target Sequence 
CTTGGTTGATGATGTGTTAGAGTCAAAGTTGGAGAGGAGATTTGAACTTGTGATGGATGAAGGAACTCTGGACACGATTG
GGTTGCACCCCGATGGACCTGTAAAGAGAATGATGTATTGNCAGTCGGTTGCAGGGCTGGTTTCTCCTGGTGGCATACTG
GTCATCACATCATGTAGCAGAACCAAGGATGAGTTGGTCCAGGAGGTAGAGAGCTTCAACCAGAGAAAGCTCAGTGCTAT
GGGCTCCGAAGGTGCGCAGGCCAGTGATACTGCGGTGTTCAAGTACATCGACCATGTCCAAACGTACCCCATCGTGGATA
GTTCCTGCATCACGACCGTTGCTTTCTCGCATAGCTGAAACATATATGTATGCTCTCTCTTTTTCTCCCTAACTTTGCCA
TCCCAGTGTGTATCCCCTTTACCCTAGTTCTCTTCGGGTGATAGTCTACTTTGCCAGATAGGTTATTCAGTTGTAACGTT
GCTTTGTTATGTCTTGAATTCTTGATGGATGTACTCTTTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1177.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis