Browse Element(s) Details


Os.12185.1.S1_at

Description gb:AK067227.1
DB_XREF= gi:32977245
TID=Os.12185.1
CNT=25
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.12185 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0698A04.25 (P0698A04.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098B14, full insert sequence.
FL= gb:AK067227.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0306011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03010OsAffx.10819.1.S1_at10/111+1140359..1141299hypothetical protein
LOC_Os01g03020Os.1070.1.S1_at11/111+1142631..1151896Leucyl-tRNA synthetase, putative, expressed
LOC_Os01g03020OsAffx.30685.1.S1_x_at1/111+1142631..1151896Leucyl-tRNA synthetase, putative, expressed
LOC_Os01g03030Os.38065.1.S1_at11/111+1152052..1155249alanyl-tRNA synthetase, putative, expressed
LOC_Os01g03040Os.1071.1.S1_at10/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.A1_at3/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.S1_at2/111+1156955..1161421expressed protein
LOC_Os01g03050Os.54619.1.S1_at1/111+1162673..1164673Oxidoreductase NAD-binding domain containing protein, expressed
LOC_Os01g03060Os.12185.1.S1_at11/111+1165450..1167932expressed protein
LOC_Os01g03070Os.28076.2.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S2_at10/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03080Os.56995.1.S1_at11/111+1178119..1178949expressed protein
LOC_Os01g03090Os.1177.1.S1_a_at11/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03090Os.45490.1.S1_x_at9/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03100Os.23963.1.A1_at11/111+1183469..1187815zinc finger family protein, putative, expressed
LOC_Os01g03100Os.30607.1.S1_at10/111+1183469..1187815zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12185.1.S1_at--861--1711Chr01:1166016..1166040 (25 bp)
ACCACCGATCATCTGGTGATGACTC
LOC_Os01g03060
Os.12185.1.S1_at--461--3551Chr01:1166007..1166031 (25 bp)
CATCTGGTGATGACTCAGGGTCTGA
LOC_Os01g03060
Os.12185.1.S1_at--576--6171Chr01:1165930..1165954 (25 bp)
GAGGATGCAACATCAGATTCCAACA
LOC_Os01g03060
Os.12185.1.S1_at--620--2091Chr01:1165921..1165945 (25 bp)
ACATCAGATTCCAACAACCATAAGC
LOC_Os01g03060
Os.12185.1.S1_at--578--8031Chr01:1165890..1165914 (25 bp)
GGAGTCGCTCCCTGGAGGAGTCATC
LOC_Os01g03060
Os.12185.1.S1_at--106--991Chr01:1165875..1165899 (25 bp)
AGGAGTCATCCGATGATGCAGCTGC
LOC_Os01g03060
Os.12185.1.S1_at--733--651Chr01:1165860..1165884 (25 bp)
ATGCAGCTGCCGGTGAATATGAAAA
LOC_Os01g03060
Os.12185.1.S1_at--356--1731Chr01:1165758..1165782 (25 bp)
ACCGTAGCTCTTCTGAACCTAATGA
LOC_Os01g03060
Os.12185.1.S1_at--945--3831Chr01:1165746..1165770 (25 bp)
CTGAACCTAATGACAAGAAGCGGCA
LOC_Os01g03060
Os.12185.1.S1_at--336--491Chr01:1165514..1165538 (25 bp)
ATCTGTGTTGGCTAATTTGAACTTC
LOC_Os01g03060
Os.12185.1.S1_at--421--6691Chr01:1165481..1165505 (25 bp)
GTTCGAATTGTTCTATTGACTGCTC
LOC_Os01g03060
Target Sequence 
ACCACCGATCATCTGGTGATGACTCAGGGTCTGAGTCTGAGGAGAGGGGCAGGTCAAGACATAAGAAACATCATAGATCA
AGCGATGAGGATGCAACATCAGATTCCAACAACCATAAGCNCCGTAGGAGTCGCTCCCTGGAGGAGTCATCCGATGATGC
AGCTGCCGGTGAATATGAAAAGGTGAGAAATGGTAAAAGGCCTCACAAGACCGGACACCNTCGTCACCACCACCGCCACC
ACCATCACCATCATGATCACCGTAGCTCTTCTGAACCTAATGACAAGAAGCGGCAAGATGGCCAGAAAGCCCTTGAAGGT
GGCAACGTTGATTAAACTCCAGCGGCACTAGTTGAATTGGTTTTTGGCGCGTGAAAAGAATTTTAGTTGTCTTATCTTTT
ATGTTGGTCACTCTTTNATTCCAACGTTGTGGATTCTGACGTTGTACTGATACNAAGTCGGTTCGGTGATTGTGACTTTT
ATGTCTCGTCNGTTTCTTCNGTTTCATCTGTGTTGGCTAATTTGAACTTCNGTCGGTGGTTCGAATTGTTCTATTGACTG
CTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis