Browse Element(s) Details


OsAffx.10819.1.S1_at

Description tigr:9629.m00213
TID=OsAffx.10819.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0301010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02980OsAffx.10886.1.S1_at11/111+1117121..1123551hypothetical protein
LOC_Os01g02980OsAffx.10886.2.S1_at9/111+1117121..1123551hypothetical protein
LOC_Os01g02990OsAffx.22815.2.S1_at11/111+1134043..1134426hypothetical protein
LOC_Os01g02999NANA1+1135682..1136375NA
LOC_Os01g03010OsAffx.10819.1.S1_at10/111+1140359..1141299hypothetical protein
LOC_Os01g03020Os.1070.1.S1_at11/111+1142631..1151896Leucyl-tRNA synthetase, putative, expressed
LOC_Os01g03020OsAffx.30685.1.S1_x_at1/111+1142631..1151896Leucyl-tRNA synthetase, putative, expressed
LOC_Os01g03030Os.38065.1.S1_at11/111+1152052..1155249alanyl-tRNA synthetase, putative, expressed
LOC_Os01g03040Os.1071.1.S1_at10/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.A1_at3/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.S1_at2/111+1156955..1161421expressed protein
LOC_Os01g03050Os.54619.1.S1_at1/111+1162673..1164673Oxidoreductase NAD-binding domain containing protein, expressed
LOC_Os01g03060Os.12185.1.S1_at11/111+1165450..1167932expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10819.1.S1_at--154--2891Chr01:1141239..1141263 (25 bp)
AAGGGTCTCGCTAAGGTCCTTGATC
LOC_Os01g03010
OsAffx.10819.1.S1_at--460--8151Chr01:1141196..1141220 (25 bp)
GGAAACTTTCTGACCTGGACAACCA
LOC_Os01g03010
OsAffx.10819.1.S1_at--607--5011Chr01:1141171..1141195 (25 bp)
GCAGGAAGCGCATCACATTGCGATC
LOC_Os01g03010
OsAffx.10819.1.S1_at--871--9691Chr01:1141159..1141183 (25 bp)
TCACATTGCGATCCAGCGCCTGGAA
LOC_Os01g03010
OsAffx.10819.1.S1_at--605--7571Chr01:1141133..1141157 (25 bp)
GGGCTGGCCGCGAACGTCATCAGCA
LOC_Os01g03010
OsAffx.10819.1.S1_at--591--1811Chr01:1141109..1141133 (25 bp)
ACCCTGGCGACCGTGATGCTGATGG
LOC_Os01g03010
OsAffx.10819.1.S1_at--41--1651NONE
AGCGACGGTCGCCACGATACGACAT
NONE
OsAffx.10819.1.S1_at--182--6491Chr01:1140523..1140547 (25 bp)
GATACGACATCTTCAGTGGGCCAAT
LOC_Os01g03010
OsAffx.10819.1.S1_at--232--10531Chr01:1140512..1140536 (25 bp)
TTCAGTGGGCCAATCGTCCGCTCAG
LOC_Os01g03010
OsAffx.10819.1.S1_at--763--711Chr01:1140408..1140432 (25 bp)
ATGATCCCTACACCCGTGTTGATGA
LOC_Os01g03010
OsAffx.10819.1.S1_at--630--6652Chr08:16321579..16321652 (25 bp)
GTTGATGAGAAATCCGCGCTCGGCC
NONE
Target Sequence 
AAGGGTCTCGCTAAGGTCCTTGATCACCTTGACTCCATCCGGGGGAAACTTTCTGACCTGGACAACCAGCAGGAAGCGCA
TCACATTGCGATCCAGCGCCTGGAACGGGCTGGCCGCGAACGTCATCAGCACCCTGGCGACCGTGATGCTGATGGGGACC
GCGACAGCGACGGTCGCCACGATACGACATCTTCAGTGGGCCAATCGTCCGCTCAGGTGGCCAGCCGCACGGTTTGCCGT
CTGACGCCGCCGGAGATGGATGAGCGACGGCGGAAGGGGTTGTGCTTCAACTGCGATGATCCCTACACCCGTGTTGATGA
GAAATCCGCGCTCGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10819.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis