Browse Element(s) Details


OsAffx.22815.2.S1_at

Description tigr:9629.m00211
TID=OsAffx.22815.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0299011/11hypothetical protein
LOC_Os06g255904/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02970NANA1+1109235..1110135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02980OsAffx.10886.1.S1_at11/111+1117121..1123551hypothetical protein
LOC_Os01g02980OsAffx.10886.2.S1_at9/111+1117121..1123551hypothetical protein
LOC_Os01g02990OsAffx.22815.2.S1_at11/111+1134043..1134426hypothetical protein
LOC_Os01g02999NANA1+1135682..1136375NA
LOC_Os01g03010OsAffx.10819.1.S1_at10/111+1140359..1141299hypothetical protein
LOC_Os01g03020Os.1070.1.S1_at11/111+1142631..1151896Leucyl-tRNA synthetase, putative, expressed
LOC_Os01g03020OsAffx.30685.1.S1_x_at1/111+1142631..1151896Leucyl-tRNA synthetase, putative, expressed
LOC_Os01g03030Os.38065.1.S1_at11/111+1152052..1155249alanyl-tRNA synthetase, putative, expressed
LOC_Os01g03040Os.1071.1.S1_at10/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.A1_at3/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.S1_at2/111+1156955..1161421expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22815.2.S1_at--1121--5991Chr01:1134187..1134211 (25 bp)
GGGAGTACTCGGCACGTCAAATCCG
LOC_Os01g02990
OsAffx.22815.2.S1_at--501--6091Chr01:1134185..1134209 (25 bp)
GAGTACTCGGCACGTCAAATCCGTT
LOC_Os01g02990
OsAffx.22815.2.S1_at--355--9791Chr01:1134182..1134206 (25 bp)
TACTCGGCACGTCAAATCCGTTTTT
LOC_Os01g02990
OsAffx.22815.2.S1_at--374--5352Chr01:16351019..16351043 (25 bp)
GAAGATTTGCAACGTATGCGACGAA
NONE
OsAffx.22815.2.S1_at--666--613Chr06:14968797..14968817 (21 bp)
ATGCGACGAATTTTGAAGCTCTGTG
LOC_Os06g25590
OsAffx.22815.2.S1_at--212--4591Chr01:1134127..1134151 (25 bp)
GCGACGAATTTTGAAGCTCTGTGAA
LOC_Os01g02990
OsAffx.22815.2.S1_at--206--172Chr06:14968802..14968826 (25 bp)
ATTTTGAAGCTCTGTGAATGGCGCA
LOC_Os06g25590
OsAffx.22815.2.S1_at--196--5412Chr06:14968807..14968831 (25 bp)
GAAGCTCTGTGAATGGCGCAAAATT
LOC_Os06g25590
OsAffx.22815.2.S1_at--186--3894Chr06:14968813..14968837 (25 bp)
CTGTGAATGGCGCAAAATTAGGGTT
LOC_Os06g25590
OsAffx.22815.2.S1_at--441--7671Chr01:1134081..1134105 (25 bp)
GGGATTTTTCCTCCGGTGATGATGA
LOC_Os01g02990
OsAffx.22815.2.S1_at--973--171Chr01:1134078..1134102 (25 bp)
ATTTTTCCTCCGGTGATGATGATTG
LOC_Os01g02990
Target Sequence 
GGGAGTACTCGGCACGTCAAATCCGTTTTTACCTTCAATTTCAGAAGATTTGCAACGTATGCGACGAATTTTGAAGCTCT
GTGAATGGCGCAAAATTAGGGTTTCGGGGATTTTTCCTCCGGTGATGATGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22815.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis