Browse Element(s) Details


Os.38065.1.S1_at

Description gb:AK104753.1
DB_XREF= gi:32989962
TID=Os.38065.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38065 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-309-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-038-F08, full insert sequence.
FL= gb:AK109436.2 gb:AK067022.1 gb:AK104753.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0303011/11alanyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02990OsAffx.22815.2.S1_at11/111+1134043..1134426hypothetical protein
LOC_Os01g02999NANA1+1135682..1136375NA
LOC_Os01g03010OsAffx.10819.1.S1_at10/111+1140359..1141299hypothetical protein
LOC_Os01g03020Os.1070.1.S1_at11/111+1142631..1151896Leucyl-tRNA synthetase, putative, expressed
LOC_Os01g03020OsAffx.30685.1.S1_x_at1/111+1142631..1151896Leucyl-tRNA synthetase, putative, expressed
LOC_Os01g03030Os.38065.1.S1_at11/111+1152052..1155249alanyl-tRNA synthetase, putative, expressed
LOC_Os01g03040Os.1071.1.S1_at10/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.A1_at3/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.S1_at2/111+1156955..1161421expressed protein
LOC_Os01g03050Os.54619.1.S1_at1/111+1162673..1164673Oxidoreductase NAD-binding domain containing protein, expressed
LOC_Os01g03060Os.12185.1.S1_at11/111+1165450..1167932expressed protein
LOC_Os01g03070Os.28076.2.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S2_at10/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03080Os.56995.1.S1_at11/111+1178119..1178949expressed protein
LOC_Os01g03090Os.1177.1.S1_a_at11/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03090Os.45490.1.S1_x_at9/111+1180214..1183501SLL2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38065.1.S1_at--54--3191Chr01:1153394..1153418 (25 bp)
CAATTGTGTGGAGGTGCTCTGCCTA
LOC_Os01g03030
Os.38065.1.S1_at--693--4811Chr01:1153379..1153403 (25 bp)
GCTCTGCCTAGCTACATTTCAAAAG
LOC_Os01g03030
Os.38065.1.S1_at--212--191Chr01:1152982..1153388 (25 bp)
ATTTCAAAAGATAGCACCCCTCGCA
LOC_Os01g03030
Os.38065.1.S1_at--1090--211Chr01:1152950..1152974 (25 bp)
ATTTGGTGATTATCCTGGTGGCCCT
LOC_Os01g03030
Os.38065.1.S1_at--458--8471Chr01:1152932..1152956 (25 bp)
TGGCCCTTGTGGTGGTACACATGTT
LOC_Os01g03030
Os.38065.1.S1_at--291--2191Chr01:1152916..1152940 (25 bp)
ACACATGTTGCCGATATCTCTATCA
LOC_Os01g03030
Os.38065.1.S1_at--182--2331Chr01:1152430..1152454 (25 bp)
AAAGTCTCCTACAGTGTCAGTCTAT
LOC_Os01g03030
Os.38065.1.S1_at--250--7111Chr01:1152415..1152439 (25 bp)
GTCAGTCTATGATTCTTTTTACCCA
LOC_Os01g03030
Os.38065.1.S1_at--951--10451Chr01:1152397..1152421 (25 bp)
TTACCCATGCATTTGGCACCTGGAA
LOC_Os01g03030
Os.38065.1.S1_at--218--271Chr01:1152218..1152242 (25 bp)
ATATGTAACTTCCTGTACCACCATG
LOC_Os01g03030
Os.38065.1.S1_at--243--8131Chr01:1152194..1152218 (25 bp)
GGACTATATGTGTCTTTTTCCTGAA
LOC_Os01g03030
Target Sequence 
CAATTGTGTGGAGGTGCTCTGCCTAGCTACATTTCAAAAGATAGCACCCCTCGCATTGTGAAATTTGGTGATTATCCTGG
TGGCCCTTGTGGTGGTACACATGTTGCCGATATCTCTATCATCAACAACATAAAGGTCACAAACATAAGAGTCAAGAAAG
GCCTCACCAAAGTCTCCTACAGTGTCAGTCTATGATTCTTTTTACCCATGCATTTGGCACCTGGAATTTGTCAGAGGAGT
GAAGAGGCAAACATTCAGTGAAATCAGAAGGCTGATACCAAATGATTTTTTTTAAAAAATCTATGTTTAGACAAAGAGTA
ATTACATGTAATATTTTGGAAAGCACTGTTAGTTCTATGCTAAATTTCGTGTCACATCACTATATGTAACTTCCTGTACC
ACCATGGACTATATGTGTCTTTTTCCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38065.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis