Browse Element(s) Details


Os.28076.1.S2_at

Description gb:AK122166.1
DB_XREF= gi:37991812
TID=Os.28076.1
CNT=36
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.28076 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative eukaryotic translation initiation factor 3 large subunit (P0684C01.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033147M02, full insert sequence.
FL= gb:AK073457.1 gb:AK072604.1 gb:AK106560.1 gb:AK063986.1 gb:AK122166.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0307010/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03020Os.1070.1.S1_at11/111+1142631..1151896Leucyl-tRNA synthetase, putative, expressed
LOC_Os01g03020OsAffx.30685.1.S1_x_at1/111+1142631..1151896Leucyl-tRNA synthetase, putative, expressed
LOC_Os01g03030Os.38065.1.S1_at11/111+1152052..1155249alanyl-tRNA synthetase, putative, expressed
LOC_Os01g03040Os.1071.1.S1_at10/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.A1_at3/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.S1_at2/111+1156955..1161421expressed protein
LOC_Os01g03050Os.54619.1.S1_at1/111+1162673..1164673Oxidoreductase NAD-binding domain containing protein, expressed
LOC_Os01g03060Os.12185.1.S1_at11/111+1165450..1167932expressed protein
LOC_Os01g03070Os.28076.2.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S2_at10/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03080Os.56995.1.S1_at11/111+1178119..1178949expressed protein
LOC_Os01g03090Os.1177.1.S1_a_at11/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03090Os.45490.1.S1_x_at9/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03100Os.23963.1.A1_at11/111+1183469..1187815zinc finger family protein, putative, expressed
LOC_Os01g03100Os.30607.1.S1_at10/111+1183469..1187815zinc finger family protein, putative, expressed
LOC_Os01g03110Os.49076.1.S1_at11/111+1195489..1200304expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28076.1.S2_at--106--7691Chr01:1169128..1169152 (25 bp)
GGGTTCACGGGATGATCGCCCACGT
LOC_Os01g03070
Os.28076.1.S2_at--860--2791Chr01:1169039..1169063 (25 bp)
AAGATGGTCCTCCAGGCACATGGCG
LOC_Os01g03070
Os.28076.1.S2_at--196--8251Chr01:1169025..1169049 (25 bp)
GGCACATGGCGACCTTCAAGATACT
LOC_Os01g03070
Os.28076.1.S2_at--674--891Chr01:1168968..1168992 (25 bp)
AGGCGCAACTGAAGCCGTCTGCTTT
LOC_Os01g03070
Os.28076.1.S2_at--792--7171Chr01:1168952..1168976 (25 bp)
GTCTGCTTTCAGATGTGGACTGCTA
LOC_Os01g03070
Os.28076.1.S2_at--92--6051Chr01:1168923..1168947 (25 bp)
GAGATTTTTTGCTGTCCAGGGCCAT
LOC_Os01g03070
Os.28076.1.S2_at--1156--5271Chr01:1168870..1168894 (25 bp)
GAATGTTTGACTGTTTGCGCATCAA
LOC_Os01g03070
Os.28076.1.S2_at--289--7611Chr01:1168810..1168834 (25 bp)
GGGCAATAGCACCTTTCCTAAGTTA
LOC_Os01g03070
Os.28076.1.S2_at--351--191Chr01:1168774..1168798 (25 bp)
ATTTCGTTGTTGCAGTTACTCCATT
LOC_Os01g03070
Os.28076.1.S2_at--176--71Chr01:1168752..1168776 (25 bp)
ATTGCACACTGGATTGCTACTCGTT
LOC_Os01g03070
Os.28076.1.S2_at--196--9931Chr01:1168698..1168720 (23 bp)
TACTGGAATATTGCCCTTGTCTTAA
NONE
Target Sequence 
GGGTTCACGGGATGATCGCCCACGTCCTGATATGCGTCCGCTCCGCCAAGAGGCACCCCCTGCTCGCGATGCTGCTCCCC
CAGCCCGCCAAGATGGTCCTCCAGGCACATGGCGACCTTCAAGATACTCAAGTTCATCATCTTCCTCAACCTGGAGCAGC
AGGCGCAACTGAAGCCGTCTGCTTTCAGATGTGGACTGCTAGGGTGAGATTTTTTGCTGTCCAGGGCCATTGCTGAGATA
AGCCTGTGAAACATGGTTGAATGTTTGACTGTTTGCGCATCAAATGCTCGTAAAATTTTGGAGTTAGGACNTGCTTCAGG
GCAATAGCACCTTTCCTAAGTTATGTCAAATGTTATTTCGTTGTTGCAGTTACTCCATTGCACACTGGATTGCTACTCGT
TAAGTTTGTCCAAACTTTGGCGCTGTTAGTAATACTGGAATATTGCCCTTGTCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28076.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis