Browse Element(s) Details


Os.30607.1.S1_at

Description gb:AK108601.1
DB_XREF= gi:32993810
TID=Os.30607.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0684C01.6 (P0684C01.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E11, full insert sequence.
FL= gb:AK108601.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0310010/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03040Os.1071.1.S1_at10/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.A1_at3/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.S1_at2/111+1156955..1161421expressed protein
LOC_Os01g03050Os.54619.1.S1_at1/111+1162673..1164673Oxidoreductase NAD-binding domain containing protein, expressed
LOC_Os01g03060Os.12185.1.S1_at11/111+1165450..1167932expressed protein
LOC_Os01g03070Os.28076.2.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S2_at10/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03080Os.56995.1.S1_at11/111+1178119..1178949expressed protein
LOC_Os01g03090Os.1177.1.S1_a_at11/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03090Os.45490.1.S1_x_at9/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03100Os.23963.1.A1_at11/111+1183469..1187815zinc finger family protein, putative, expressed
LOC_Os01g03100Os.30607.1.S1_at10/111+1183469..1187815zinc finger family protein, putative, expressed
LOC_Os01g03110Os.49076.1.S1_at11/111+1195489..1200304expressed protein
LOC_Os01g03119OsAffx.1737.1.S1_at3/111+1208373..1210915NA

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30607.1.S1_at--170--6371Chr01:1183611..1183635 (25 bp)
GATCCATCCACTTGCATTTTTCATT
LOC_Os01g03100
Os.30607.1.S1_at--985--172Chr06:5203152..5203282 (24 bp)
ATTTTTCATTTTACAATCGCAATCA
NONE
Os.30607.1.S1_at--579--9351Chr01:1183580..1183604 (25 bp)
TCGCAATCATTTTCGTCTATAACAG
LOC_Os01g03100
Os.30607.1.S1_at--597--3691Chr01:1183564..1183588 (25 bp)
CTATAACAGTAGAGCCAGAATGGCA
LOC_Os01g03100
Os.30607.1.S1_at--1024--8211Chr01:1183543..1183567 (25 bp)
GGCAATTAGGCATTCCATGGCTATC
LOC_Os01g03100
Os.30607.1.S1_at--600--3591Chr01:1183533..1183557 (25 bp)
CATTCCATGGCTATCATCAACTCAG
LOC_Os01g03100
Os.30607.1.S1_at--796--371Chr01:1183518..1183542 (25 bp)
ATCAACTCAGATCGTCAACCCATGT
LOC_Os01g03100
Os.30607.1.S1_at--1109--7071Chr01:1183505..1183529 (25 bp)
GTCAACCCATGTACGTTATTGCCTG
LOC_Os01g03100
Os.30607.1.S1_at--855--6991Chr01:1183495..1183519 (25 bp)
GTACGTTATTGCCTGATCGATTGGT
LOC_Os01g03100
Os.30607.1.S1_at--897--4471Chr01:1183485..1183509 (25 bp)
GCCTGATCGATTGGTGAATTGTTGA
LOC_Os01g03100
Os.30607.1.S1_at--652--51Chr01:1183469..1183492 (24 bp)
ATTGTTGATTCAGCTTTCATAGCAG
NONE
Target Sequence 
GATCCATCCACTTGCATTTTTCATTTTACAATCGCAATCATTTTCGTCTATAACAGTAGAGCCAGAATGGCAATTAGGCA
TTCCATGGCTATCATCAACTCAGATCGTCAACCCATGTACGTTATTGCCTGATCGATTGGTGAATTGTTGATTCAGCTTT
CATAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis