Browse Element(s) Details


Os.45490.1.S1_x_at

Description gb:NM_184143.1
DB_XREF= gi:34895377
GEN=P0684C01.5
TID=Os.45490.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45490 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0684C01.5 (P0684C01.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0684C01.5 (P0684C01.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g030909/11SLL2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03030Os.38065.1.S1_at11/111+1152052..1155249alanyl-tRNA synthetase, putative, expressed
LOC_Os01g03040Os.1071.1.S1_at10/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.A1_at3/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.S1_at2/111+1156955..1161421expressed protein
LOC_Os01g03050Os.54619.1.S1_at1/111+1162673..1164673Oxidoreductase NAD-binding domain containing protein, expressed
LOC_Os01g03060Os.12185.1.S1_at11/111+1165450..1167932expressed protein
LOC_Os01g03070Os.28076.2.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S2_at10/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03080Os.56995.1.S1_at11/111+1178119..1178949expressed protein
LOC_Os01g03090Os.1177.1.S1_a_at11/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03090Os.45490.1.S1_x_at9/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03100Os.23963.1.A1_at11/111+1183469..1187815zinc finger family protein, putative, expressed
LOC_Os01g03100Os.30607.1.S1_at10/111+1183469..1187815zinc finger family protein, putative, expressed
LOC_Os01g03110Os.49076.1.S1_at11/111+1195489..1200304expressed protein
LOC_Os01g03119OsAffx.1737.1.S1_at3/111+1208373..1210915NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45490.1.S1_x_at--229--5711Chr01:1180450..1180474 (25 bp)
GACTCGTGGTCCATCAAGAGCGACT
LOC_Os01g03090
Os.45490.1.S1_x_at--102--9731Chr01:1180463..1180487 (25 bp)
TCAAGAGCGACTACGGGAGCACCCT
LOC_Os01g03090
Os.45490.1.S1_x_at--81--8051NONE
GGAGATTTCAGGTTCTCTGATCTGA
NONE
Os.45490.1.S1_x_at--256--8851Chr01:1182104..1182128 (25 bp)
TGATCTGACTGGGATCGACCACAGT
LOC_Os01g03090
Os.45490.1.S1_x_at--1005--6151Chr01:1182141..1182165 (25 bp)
GAGGTTGCTCGTAATCTTGCTATCC
LOC_Os01g03090
Os.45490.1.S1_x_at--618--431Chr01:1182154..1182178 (25 bp)
ATCTTGCTATCCGTGATGGGTTTGA
LOC_Os01g03090
Os.45490.1.S1_x_at--736--131NONE
ATTAATTTCTTGGTCATCACATCAT
NONE
Os.45490.1.S1_x_at--1055--871Chr01:1183160..1183184 (25 bp)
AGGCCAGTGATACTGCGGTGTTCAA
LOC_Os01g03090
Os.45490.1.S1_x_at--450--1171Chr01:1183184..1183208 (25 bp)
AGTACATCGACCATGTCCAAACGTA
LOC_Os01g03090
Os.45490.1.S1_x_at--454--8571Chr01:1183217..1183241 (25 bp)
TGGATAGTTCCTGCATCACGACCGT
LOC_Os01g03090
Os.45490.1.S1_x_at--197--1791Chr01:1183237..1183261 (25 bp)
ACCGTTGCTTTCTCGCATAGCTGAA
LOC_Os01g03090
Target Sequence 
GACTCGTGGTCCATCAAGAGCGACTACGGGAGCACCCTCGACGACGAGCAGCGGTACGCCGACGCCGCCGAGGTCCTCCT
CGCCTCCTCCTCCTCCTCCTCCGCCGCCGCCTCCGGCCCCGCCGCCGCCACGACGGCGTCGGTCGCCGCCAACCCCTCCG
GAGATTTCAGGTTCTCTGATCTGACTGGGATCGACCACAGTGAAGGTGCAATTGAGGTTGCTCGTAATCTTGCTATCCGT
GATGGGTTTGAGCACATTAATTTCTTGGTCATCACATCATGTAGCAGAACCAAGGATGAGTTGGTCCAGGAGGTAGAGAG
CTTCAACCAGAGAAAGCTCAGTNCTATGGGCTCCGAAGNTGCGCAGGCCAGTGATACTGCGGTGTTCAAGTACATCGACC
ATGTCCAAACGTACCCCATNGTGGATAGTTCCTGCATCACGACCGTTGCTTTCTCGCATAGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45490.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis