Browse Element(s) Details


Os.45486.1.S1_x_at

Description gb:AK120079.1
DB_XREF= gi:37989702
TID=Os.45486.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.45486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ABC transporter (P0445D12.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013012G06, full insert sequence.
FL= gb:AK120079.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0314411/11ABC-2 type transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03110Os.49076.1.S1_at11/111+1195489..1200304expressed protein
LOC_Os01g03119OsAffx.1737.1.S1_at3/111+1208373..1210915NA
LOC_Os01g03130OsAffx.23070.1.S1_at11/111+1213817..1214896expressed protein
LOC_Os01g03130Os.55272.1.S1_at11/111+1213817..1214896expressed protein
LOC_Os01g03144Os.45486.1.S1_x_at11/111+1219903..1227308ABC-2 type transporter family protein, expressed
LOC_Os01g03144Os.1182.1.S1_x_at11/111+1219903..1227308ABC-2 type transporter family protein, expressed
LOC_Os01g03160Os.6520.1.S1_at11/111+1229295..1233583Core-2/I-Branching enzyme family protein, expressed
LOC_Os01g03170OsAffx.10889.1.S1_x_at11/111+1235425..1239153Seven in absentia protein family protein, expressed
LOC_Os01g03170OsAffx.10889.1.S1_at11/111+1235425..1239153Seven in absentia protein family protein, expressed
LOC_Os01g03180Os.30032.2.S1_x_at11/111+1246683..1248223expressed protein
LOC_Os01g03180Os.30032.1.S1_at11/111+1246683..1248223expressed protein
LOC_Os01g03190Os.31540.1.S1_at11/111+1250830..1252437expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45486.1.S1_x_at--281--10571Chr01:1221090..1221114 (25 bp)
TTCTTCACAGCATCTCGGCATGAGA
LOC_Os01g03144
Os.45486.1.S1_x_at--1146--4371Chr01:1221021..1221045 (25 bp)
CCAAGCCCATCACTTTGAAGCAGTA
LOC_Os01g03144
Os.45486.1.S1_x_at--1057--5751Chr01:1220887..1220911 (25 bp)
GACGAGTCGCTGCATTCGATGTGAT
LOC_Os01g03144
Os.45486.1.S1_x_at--980--10351Chr01:1220849..1220873 (25 bp)
TTTATTGTTCCATGATTCCTTCCCT
LOC_Os01g03144
Os.45486.1.S1_x_at--763--5691Chr01:1220793..1220817 (25 bp)
GACTAGTACTTCCTGGTTGGGCACA
LOC_Os01g03144
Os.45486.1.S1_x_at--337--9651Chr01:1220732..1220756 (25 bp)
TCAGTTTTAATCTTCACGCGTTTGC
LOC_Os01g03144
Os.45486.1.S1_x_at--827--1831Chr01:1220717..1220741 (25 bp)
ACGCGTTTGCTTACTCCTATATATA
LOC_Os01g03144
Os.45486.1.S1_x_at--732--8791Chr01:1220651..1220675 (25 bp)
TGTTCATTTGTTCCATTGCTTCTTC
LOC_Os01g03144
Os.45486.1.S1_x_at--875--9071Chr01:1220635..1220659 (25 bp)
TGCTTCTTCTCTTGATCACTTGCTA
LOC_Os01g03144
Os.45486.1.S1_x_at--179--3751Chr01:1220609..1220633 (25 bp)
CTCACTACTGCGATTTGCCAACAAT
LOC_Os01g03144
Os.45486.1.S1_x_at--474--771Chr01:1220563..1220587 (25 bp)
ATGTCGTCGTCGATGTCATTGCTTA
LOC_Os01g03144
Target Sequence 
TTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCACTAAATCATGCGGCAATAAAACAATTAGCCGCCCAAGCCCATC
ACTTTGAAGCAGTACATCAACTCAACTGAATGATTAATTTCCTCTTTTCTTTTTTGTCAAGCAAGTACTCGTAGTAATAG
TATTCAACTCAATAATGGGAGATGGCCGGTGTTGGTTGGAAGCGACGAGTCGCTGCATTCGATGTGATTACTTCTAAACT
ATTTATTGTTCCATGATTCCTTCCCTGAATAAATCACCGGCCAAAATGTGCCATGTGGACTAGTACTTCCTGGTTGGGCA
CACGTGTCTCCACGTGGTTGGTCCAGACGATGACTAAATCAGTTTTAATCTTCACGCGTTTGCTTACTCCTATATATATN
TGTACCCATTTGANCTANANNNNNNANNANNNNANANANTGTTCATTTGTTCCATTGCTTCTTCTCTTGATCACTTGCTA
CCTCACTACTGCGATTTGCCAACAATTTTTTTGGTTTTTGGATGGCCATGTCGTCGTCGATGTCATTGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45486.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis