Browse Element(s) Details


Os.1182.1.S1_x_at

Description gb:BI807193
DB_XREF= gi:15854397
DB_XREF=S086E04
CLONE=S086E04
TID=Os.1182.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.1182 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0684C01.11 (P0684C01.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0314411/11ABC-2 type transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03110Os.49076.1.S1_at11/111+1195489..1200304expressed protein
LOC_Os01g03119OsAffx.1737.1.S1_at3/111+1208373..1210915NA
LOC_Os01g03130OsAffx.23070.1.S1_at11/111+1213817..1214896expressed protein
LOC_Os01g03130Os.55272.1.S1_at11/111+1213817..1214896expressed protein
LOC_Os01g03144Os.45486.1.S1_x_at11/111+1219903..1227308ABC-2 type transporter family protein, expressed
LOC_Os01g03144Os.1182.1.S1_x_at11/111+1219903..1227308ABC-2 type transporter family protein, expressed
LOC_Os01g03160Os.6520.1.S1_at11/111+1229295..1233583Core-2/I-Branching enzyme family protein, expressed
LOC_Os01g03170OsAffx.10889.1.S1_x_at11/111+1235425..1239153Seven in absentia protein family protein, expressed
LOC_Os01g03170OsAffx.10889.1.S1_at11/111+1235425..1239153Seven in absentia protein family protein, expressed
LOC_Os01g03180Os.30032.2.S1_x_at11/111+1246683..1248223expressed protein
LOC_Os01g03180Os.30032.1.S1_at11/111+1246683..1248223expressed protein
LOC_Os01g03190Os.31540.1.S1_at11/111+1250830..1252437expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1182.1.S1_x_at--1061--3631Chr01:1220465..1220489 (25 bp)
CTTCCGGCGAGACCAGTACAGCGGC
LOC_Os01g03144
Os.1182.1.S1_x_at--759--3951Chr01:1220379..1220403 (25 bp)
CGGAGAACAACTACGAGGCGCCGGC
LOC_Os01g03144
Os.1182.1.S1_x_at--219--5971Chr01:1220338..1220362 (25 bp)
GAGAAGCGGTACTACCCGGCGTACG
LOC_Os01g03144
Os.1182.1.S1_x_at--669--1491Chr01:1220145..1220169 (25 bp)
AGCACCACGTCGTTCCTTGACCGGA
LOC_Os01g03144
Os.1182.1.S1_x_at--785--10671Chr01:1220133..1220157 (25 bp)
TTCCTTGACCGGATCATCATCTCTA
LOC_Os01g03144
Os.1182.1.S1_x_at--1132--3551Chr01:1220119..1220143 (25 bp)
CATCATCTCTACCTTGCAGCTAAAA
LOC_Os01g03144
Os.1182.1.S1_x_at--1006--9971Chr01:1220110..1220134 (25 bp)
TACCTTGCAGCTAAAATGTTGCCTG
LOC_Os01g03144
Os.1182.1.S1_x_at--738--2991Chr01:1220096..1220120 (25 bp)
AATGTTGCCTGAAACTGATTTCCAA
LOC_Os01g03144
Os.1182.1.S1_x_at--197--5551Chr01:1220086..1220110 (25 bp)
GAAACTGATTTCCAACTTGTAAACA
LOC_Os01g03144
Os.1182.1.S1_x_at--173--8211Chr01:1220046..1220070 (25 bp)
GGAATTAACCCTGCATTATTATCGC
LOC_Os01g03144
Os.1182.1.S1_x_at--427--3311Chr01:1219989..1220013 (25 bp)
CACAGCTGATCTTGTGTAGTTGATC
LOC_Os01g03144
Target Sequence 
CTTCCGGCGAGACCAGTACAGCGGCGGGGCGCTGGTGGACTCGAGCATGGCGGTGCTCCGGCGGAGGATGAGGGAGGCGA
GGATGGCGGAGAACAACTACGAGGCGCCGGCGGGGTGGTCGGCGTGGGAGAAGCGGTACTACCCGGCGTACGTCTCCGAC
GTGTCCGCCGCCGTCGGNGCGCTGCAGCTGCTGCTCATGGGCACCCGCCCCAGCGTCGCCATCGCCGCCGCCGCGCTGCT
GTTCGCCGGCGTGCCGGTCTCCGCCGTCGCCGCCGTGCACCACCTGGCGCAGCTGGCGGCGGAGTCCGCCGTGCTCCTGC
AGCACCACGTCGTTCCTTGACCGGATCATCATCTCTACCTTGCAGCTAAAATGTTGCCTGAAACTGATTTCCAACTTGTA
AACAAGAGTGTGTTAGAAAGGAATTAACCCTGCATTATTATCGCAGTGTTAAATGTAGATAGAATGATATGCTATACACA
GCTGATCTTGTGTAGTTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1182.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis