Browse Element(s) Details


Os.55272.1.S1_at

Description gb:AK107776.1
DB_XREF= gi:32992985
TID=Os.55272.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55272 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-C01, full insert sequence.
FL= gb:AK107776.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0313011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03110Os.49076.1.S1_at11/111+1195489..1200304expressed protein
LOC_Os01g03119OsAffx.1737.1.S1_at3/111+1208373..1210915NA
LOC_Os01g03130OsAffx.23070.1.S1_at11/111+1213817..1214896expressed protein
LOC_Os01g03130Os.55272.1.S1_at11/111+1213817..1214896expressed protein
LOC_Os01g03144Os.45486.1.S1_x_at11/111+1219903..1227308ABC-2 type transporter family protein, expressed
LOC_Os01g03144Os.1182.1.S1_x_at11/111+1219903..1227308ABC-2 type transporter family protein, expressed
LOC_Os01g03160Os.6520.1.S1_at11/111+1229295..1233583Core-2/I-Branching enzyme family protein, expressed
LOC_Os01g03170OsAffx.10889.1.S1_x_at11/111+1235425..1239153Seven in absentia protein family protein, expressed
LOC_Os01g03170OsAffx.10889.1.S1_at11/111+1235425..1239153Seven in absentia protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55272.1.S1_at--633--3531Chr01:1214862..1214886 (25 bp)
CATCCTCCTCTAAAATCCATTTCAA
LOC_Os01g03130
Os.55272.1.S1_at--564--571Chr01:1214848..1214872 (25 bp)
ATCCATTTCAAATTCGCGATTCTGA
LOC_Os01g03130
Os.55272.1.S1_at--1004--3291Chr01:1214840..1214864 (25 bp)
CAAATTCGCGATTCTGATTCTCTCC
LOC_Os01g03130
Os.55272.1.S1_at--591--111Chr01:1214824..1214848 (25 bp)
ATTCTCTCCTTAATCGAATCGCGAA
LOC_Os01g03130
Os.55272.1.S1_at--735--5251Chr01:1214809..1214833 (25 bp)
GAATCGCGAATTTCGTTAGCTGAAT
LOC_Os01g03130
Os.55272.1.S1_at--837--4751Chr01:1214791..1214815 (25 bp)
GCTGAATCAAATCACAGCATTCGCT
LOC_Os01g03130
Os.55272.1.S1_at--1001--1531Chr01:1214776..1214800 (25 bp)
AGCATTCGCTAGCTGCACAATTCTT
LOC_Os01g03130
Os.55272.1.S1_at--674--10631Chr01:1214772..1214796 (25 bp)
TTCGCTAGCTGCACAATTCTTCTTA
LOC_Os01g03130
Os.55272.1.S1_at--822--3711Chr01:1214768..1214792 (25 bp)
CTAGCTGCACAATTCTTCTTATCGG
LOC_Os01g03130
Os.55272.1.S1_at--13--4771Chr01:1214765..1214789 (25 bp)
GCTGCACAATTCTTCTTATCGGAAT
LOC_Os01g03130
Os.55272.1.S1_at--331--2231Chr01:1214760..1214784 (25 bp)
ACAATTCTTCTTATCGGAATCCAAA
LOC_Os01g03130
Target Sequence 
CATCCTCCTCTAAAATCCATTTCAAATTCGCGATTCTGATTCTCTCCTTAATCGAATCGCGAATTTCGTTAGCTGAATCA
AATCACAGCATTCGCTAGCTGCACAATTCTTCTTATCGGAATCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis