Browse Element(s) Details


Os.54632.1.S1_at

Description gb:AK106317.1
DB_XREF= gi:32991526
TID=Os.54632.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54632 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-E02, full insert sequence.
FL= gb:AK106317.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2296011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g22920NANA11+12696652..12698438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22930OsAffx.9652.1.S1_x_at1/1111+12700588..12705736hypothetical protein
LOC_Os11g22940OsAffx.18923.1.S1_at2/1111+12706526..12711599retrotransposon protein, putative, unclassified
LOC_Os11g22950NANA11+12713246..12714930Transposable element protein, putative, Retrotrans_gag
LOC_Os11g22960Os.54632.1.S1_at11/1111+12719808..12722106expressed protein
LOC_Os11g22970OsAffx.29576.5.S1_at11/1111+12725310..12726035hypothetical protein
LOC_Os11g22970OsAffx.13325.1.S1_at1/1111+12725310..12726035hypothetical protein
LOC_Os11g22980Os.26886.3.S1_x_at4/1111+12737424..12739275transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g22989NANA11+12745311..12746255NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54632.1.S1_at--300--9191Chr11:12720343..12720367 (25 bp)
TGCCTAGGGATCTCACCAGATAGAT
LOC_Os11g22960
Os.54632.1.S1_at--773--2371Chr11:12720300..12720324 (25 bp)
AAACCTGCCTTGTTTTGCGTGTCGT
LOC_Os11g22960
Os.54632.1.S1_at--661--831Chr11:12720254..12720278 (25 bp)
ATGGACGGACCCCATCGTGATCGAT
LOC_Os11g22960
Os.54632.1.S1_at--785--6391Chr11:12720236..12720260 (25 bp)
GATCGATGCATGCTGTCACCACGGT
LOC_Os11g22960
Os.54632.1.S1_at--494--7151Chr11:12720170..12720194 (25 bp)
GTCTCAGCAGCACTAGTGTTTGGTT
LOC_Os11g22960
Os.54632.1.S1_at--677--8611Chr11:12720146..12720170 (25 bp)
TGGTGTCTCTCTGTGCGTTTTAGGA
LOC_Os11g22960
Os.54632.1.S1_at--96--5671Chr11:12720096..12720120 (25 bp)
GACATGATGTGTCCGGCAGCGTCAT
LOC_Os11g22960
Os.54632.1.S1_at--28--1631Chr11:12720079..12720103 (25 bp)
AGCGTCATTTCCTCGTGCCAAAGAC
LOC_Os11g22960
Os.54632.1.S1_at--904--9051Chr11:12719977..12720001 (25 bp)
TGCTTGGTTGGTGTCCCATGAAATT
LOC_Os11g22960
Os.54632.1.S1_at--868--10851Chr11:12719918..12719942 (25 bp)
TTGGTGCCTTGGTGGACACTCGACA
LOC_Os11g22960
Os.54632.1.S1_at--342--2971Chr11:12719862..12719886 (25 bp)
AATGGAACGCTGTAGTCTCAGCTCA
LOC_Os11g22960
Target Sequence 
TGCCTAGGGATCTCACCAGATAGATCGATCGATCACACATACCAAACCTGCCTTGTTTTGCGTGTCGTTGTAAAGTGAAG
CAGAAACCCATGGACGGACCCCATCGTGATCGATGCATGCTGTCACCACGGTCGCACGGCCCAAACTTTCCCATTCATCT
ATCTCNCTCACCTGTCTCAGCAGCACTAGTGTTTGGTTGGTGTCTCTCTGTGCGTTTTAGGAGTAGTAGTAAAATGAGAT
GGACATGGACATGATGTGTCCGGCAGCGTCATTTCCTCGTGCCAAAGACCACTCGAGTGCTGCCTNTCTCTCTCTCTCTC
TCTCCCCTTTTGATCTTTTTCCGATGTGTTTTTTTTTTGTAGCCTCTGCTTGGTTGGTGTCCCATGAAATTACGGAGGCA
GCTCGGTGAAATGTGGTTATATGGGNNNNNNNNNNNNNNNNNNTTGGTGCCTTGGTGGACACTCGACACTGATGAGTAGC
AGTGGAAAAAGGNTGATGTAATGGAACGCTGTAGTCTCAGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54632.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis