Browse Element(s) Details


Os.14362.1.S1_at

Description gb:AK121792.1
DB_XREF= gi:37991415
TID=Os.14362.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14362 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033095E18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033095E18, full insert sequence.
FL= gb:AK121792.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3728011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37230NANA1+21121129..21124054retrotransposon protein, putative, unclassified
LOC_Os01g37240NANA1+21124384..21127482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37250NANA1+21127873..21130501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37260Os.32877.1.S1_x_at11/111+21132652..21137009F-box domain containing protein, expressed
LOC_Os01g37260Os.32877.1.S1_at10/111+21132652..21137009F-box domain containing protein, expressed
LOC_Os01g37260Os.32877.2.S1_at7/111+21132652..21137009F-box domain containing protein, expressed
LOC_Os01g37270OsAffx.23540.1.S1_at11/111+21140502..21140942hypothetical protein
LOC_Os01g37280Os.14362.1.S1_at11/111+21143832..21147293expressed protein
LOC_Os01g37280Os.27900.1.A1_x_at1/111+21143832..21147293expressed protein
LOC_Os01g37300NANA1+21150232..21150944retrotransposon, putative, centromere-specific
LOC_Os01g37310OsAffx.25860.2.S1_x_at11/111+21153618..21155759SWIM zinc finger family protein
LOC_Os01g37310OsAffx.25860.1.S1_x_at7/111+21153618..21155759SWIM zinc finger family protein
LOC_Os01g37310Os.12304.1.S1_at4/111+21153618..21155759SWIM zinc finger family protein
LOC_Os01g37320OsAffx.25860.5.S1_at10/111+21157114..21161911hypothetical protein
LOC_Os01g37320Os.12304.1.S1_at3/111+21157114..21161911hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.14362.1.S1_at--394--8071Chr01:21146639..21146663 (25 bp)
GGAGCACATCGATCGATTTCTTCTG
LOC_Os01g37280
Os.14362.1.S1_at--743--6391Chr01:21146649..21146673 (25 bp)
GATCGATTTCTTCTGAACTTCTGAC
LOC_Os01g37280
Os.14362.1.S1_at--434--2511Chr01:21146692..21146716 (25 bp)
AACATACTTCTTCAGGCTGAGGTTT
LOC_Os01g37280
Os.14362.1.S1_at--170--6151Chr01:21146710..21146734 (25 bp)
GAGGTTTGAATTCTACTGATGTTAC
LOC_Os01g37280
Os.14362.1.S1_at--216--9751Chr01:21146742..21146766 (25 bp)
TAATTCTTGCAGACGTCAGCAGCTG
LOC_Os01g37280
Os.14362.1.S1_at--76--3531Chr01:21147066..21147090 (25 bp)
CATGAGCTGGTGGATTGATTTTCTT
LOC_Os01g37280
Os.14362.1.S1_at--617--7511Chr01:21147091..21147115 (25 bp)
GTGGTTGATAACTGAGTCTGGTGCC
LOC_Os01g37280
Os.14362.1.S1_at--1035--6871Chr01:21147159..21147183 (25 bp)
GTATTTGTGCATTCTACCAATGTTT
LOC_Os01g37280
Os.14362.1.S1_at--718--2991Chr01:21147177..21147201 (25 bp)
AATGTTTCGTATTGCGTATGTGATC
LOC_Os01g37280
Os.14362.1.S1_at--293--9551Chr01:21147224..21147248 (25 bp)
TCTTGTCCAAACATTTCCCGGATGT
LOC_Os01g37280
Os.14362.1.S1_at--1129--6751Chr01:21147247..21147271 (25 bp)
GTTAATAAATCTTTTACTCCTGTAG
LOC_Os01g37280
Target Sequence
GGAGCACATCGATCGATTTCTTCTGAACTTCTGACTAGATATGTTTTTGATAGAACATACTTCTTCAGGCTGAGGTTTGA
ATTCTACTGATGTTACTAAATTCTAATTCTTGCAGACGTCAGCAGCTGCAGTGTGCACCCTTGCAGGAGGCACAACTCGA
TGGCAAGGTGGTTGAAACTAGAAAAGGACGACAAGAGAAGATTATGCCAGTGGTGGTGGCGCCACTGGAATGCCATCCTG
GTCGTCATCCTCGACATGGGCATCGTCAAAGCTCGTCGCCGGTGGCCAACCTTCACCCCTTGCCAGAATTGGATAAACAA
TGATGGGAATAGTAGTGCTGGACCATGAGCTGGTGGATTGATTTTCTTGTGGTTGATAACTGAGTCTGGTGCCGGCCATA
TCCATCATTGTTGGTGTTGTTGTAATTTTTTTATTTGTATTTGTGCATTCTACCAATGTTTCGTATTGCGTATGTGATCA
GATAGTTGTTCTAATATAAAATCTTGTCCAAACATTTCCCGGATGTTAATAAATCTTTTACTCCTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14362.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis