Browse Element(s) Details


OsAffx.23536.1.S1_s_at

Description gb:NM_193415.1
DB_XREF= gi:34913913
GEN=OSJNBa0066C06.8
TID=OsAffx.23536.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0066C06.8 (OSJNBa0066C06.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3711011/11hypothetical protein
LOC_Os03g617501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37070OsAffx.22492.1.S1_x_at1/111+21012162..21018509retrotransposon protein, putative, unclassified
LOC_Os01g37070OsAffx.22492.1.S1_at1/111+21012162..21018509retrotransposon protein, putative, unclassified
LOC_Os01g37080Os.31312.2.S1_x_at11/111+21019137..21022480retrotransposon protein, putative, unclassified
LOC_Os01g37080Os.31312.5.S1_x_at4/111+21019137..21022480retrotransposon protein, putative, unclassified
LOC_Os01g37090NANA1+21027461..21029659expressed protein
LOC_Os01g37100OsAffx.21236.1.S1_at11/111+21032597..21034255RWP-RK domain containing protein, expressed
LOC_Os01g37110OsAffx.23536.2.S1_at11/111+21041191..21043408hypothetical protein
LOC_Os01g37110OsAffx.23536.1.S1_s_at11/111+21041191..21043408hypothetical protein
LOC_Os01g37120Os.32193.2.S1_x_at10/111+21043881..21049101transducin family protein, putative, expressed
LOC_Os01g37120Os.32193.1.S1_at10/111+21043881..21049101transducin family protein, putative, expressed
LOC_Os01g37130Os.15194.1.S1_at8/111+21065437..21069274Protein phosphatase 2C PPH1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0045010biological_processactin nucleation
GO:0031209cellular_componentSCAR complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23536.1.S1_s_at--4--1211Chr01:21041871..21041895 (25 bp)
AGTATTCCGTGAAGGCGCTCGTCAA
LOC_Os01g37110
OsAffx.23536.1.S1_s_at--470--7091Chr01:21041891..21041915 (25 bp)
GTCAACACTGTCGATCACCTGGGAT
LOC_Os01g37110
OsAffx.23536.1.S1_s_at--348--1771Chr01:21041907..21041931 (25 bp)
ACCTGGGATCCATATCCTTCAAGGT
LOC_Os01g37110
OsAffx.23536.1.S1_s_at--1001--2891Chr01:21041927..21041951 (25 bp)
AAGGTTTCAAGCCTCATCGATCAAA
LOC_Os01g37110
OsAffx.23536.1.S1_s_at--654--971Chr01:21041961..21041985 (25 bp)
AGGTTGACGACACAAATCTCCGGGT
LOC_Os01g37110
OsAffx.23536.1.S1_s_at--914--7711Chr01:21041982..21042110 (25 bp)
GGGTGTCCTGCATCCATCAGAGAGC
LOC_Os01g37110
OsAffx.23536.1.S1_s_at--30--6011Chr01:21042105..21042129 (25 bp)
GAGAGCCCAAGTGAGCCAAGCATGC
LOC_Os01g37110
OsAffx.23536.1.S1_s_at--257--8211Chr01:21042138..21042162 (25 bp)
GGAAGGCCTTTCACAGCAATCATTG
LOC_Os01g37110
OsAffx.23536.1.S1_s_at--725--8612Chr03:34945935..34946086 (25 bp)
TGGTGATCACAGCTCCCAAGTATCA
LOC_Os03g61750
OsAffx.23536.1.S1_s_at--870--6751Chr01:21042338..21042362 (25 bp)
GTTCAATGCCTAATGCTGTGCCCAA
LOC_Os01g37110
OsAffx.23536.1.S1_s_at--370--1211Chr01:21043332..21043356 (25 bp)
AGTTTCTCAAGTCGCTGCTCAGCAG
LOC_Os01g37110
Target Sequence 
AGTATTCCGTGAAGGCGCTCGTCAACACTGTCGATCACCTGGGATCCATATCCTTCAAGGTTTCAAGCCTCATCGATCAA
AGGTTCGATGAGGTTGACGACACAAATCTCCGGGTGTCCTGCATCCATCAGAGAGCCCAAGTGAGCCAAGCATGCATGGA
CAAGGAAGGCCTTTCACAGCAATCATTGGTGATCACAGCTCCCAAGTATCACAAGAGGTACATCTTACCAGCAGGAGATG
GTTCAATGCCTAATGCTGTGCCCAACTTCAGCGAGATGAGGAAGGCCAAGAACAGAGCTGCACAGATGCAACAGGTCTTC
AGCGCAAGCTTCGGTCGATCGCCCGTGCACCTTCGCAACGTGCACGCTCGTCGTCACCAGCACAGCGCCCACCTTCTGAG
AATACAATACCCACCAAACGAGATGCACACATCAGAGCACAAGAAATTGGCATCAGTGAGGTCACAAGCTGACAGAAACG
ATGACAAGGAAGGCGAGCAGACTCCAAAGAAGGGCAAGAAGTTTCTCAAGTCGCTGCTCAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23536.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis