Browse Element(s) Details


OsAffx.21236.1.S1_at

Description tigr:9629.m03509
TID=OsAffx.21236.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RWP-RK domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3710011/11RWP-RK domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37060NANA1+21002911..21009660retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37070OsAffx.22492.1.S1_x_at1/111+21012162..21018509retrotransposon protein, putative, unclassified
LOC_Os01g37070OsAffx.22492.1.S1_at1/111+21012162..21018509retrotransposon protein, putative, unclassified
LOC_Os01g37080Os.31312.2.S1_x_at11/111+21019137..21022480retrotransposon protein, putative, unclassified
LOC_Os01g37080Os.31312.5.S1_x_at4/111+21019137..21022480retrotransposon protein, putative, unclassified
LOC_Os01g37090NANA1+21027461..21029659expressed protein
LOC_Os01g37100OsAffx.21236.1.S1_at11/111+21032597..21034255RWP-RK domain containing protein, expressed
LOC_Os01g37110OsAffx.23536.2.S1_at11/111+21041191..21043408hypothetical protein
LOC_Os01g37110OsAffx.23536.1.S1_s_at11/111+21041191..21043408hypothetical protein
LOC_Os01g37120Os.32193.2.S1_x_at10/111+21043881..21049101transducin family protein, putative, expressed
LOC_Os01g37120Os.32193.1.S1_at10/111+21043881..21049101transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21236.1.S1_at--589--2091Chr01:21033294..21033318 (25 bp)
ACATCAGCCGCAACGACATTGACGC
LOC_Os01g37100
OsAffx.21236.1.S1_at--557--1671Chr01:21033289..21033313 (25 bp)
AGCCGCAACGACATTGACGCCTCTT
LOC_Os01g37100
OsAffx.21236.1.S1_at--755--8171Chr01:21033185..21033209 (25 bp)
GGAAGACTCGGCTGGACCACATCGG
LOC_Os01g37100
OsAffx.21236.1.S1_at--1008--3931Chr01:21033177..21033201 (25 bp)
CGGCTGGACCACATCGGATTCGAGG
LOC_Os01g37100
OsAffx.21236.1.S1_at--157--911Chr01:21033147..21033171 (25 bp)
AGGCGGTACTTCTACATGCCAATCA
LOC_Os01g37100
OsAffx.21236.1.S1_at--1128--7011Chr01:21033142..21033166 (25 bp)
GTACTTCTACATGCCAATCACCAAG
LOC_Os01g37100
OsAffx.21236.1.S1_at--494--3731Chr01:21033136..21033160 (25 bp)
CTACATGCCAATCACCAAGGCGGCG
LOC_Os01g37100
OsAffx.21236.1.S1_at--874--8331Chr01:21033095..21033119 (25 bp)
GGCTGACCGTGCTCAAGAAGCGCTG
LOC_Os01g37100
OsAffx.21236.1.S1_at--644--8931Chr01:21033092..21033116 (25 bp)
TGACCGTGCTCAAGAAGCGCTGCCG
LOC_Os01g37100
OsAffx.21236.1.S1_at--1082--4131Chr01:21032829..21032853 (25 bp)
CGCTGGAGAATTGCTGCGCGCTGAT
LOC_Os01g37100
OsAffx.21236.1.S1_at--976--911Chr01:21032758..21032782 (25 bp)
AGGCAGGCGTGCTTCAAGGAGAATT
LOC_Os01g37100
Target Sequence 
ACATCAGCCGCAACGACATTGACGCCTCTTCCTCTTCCTCCACCGCCGCCGCCGCCGCCGCGCGTGACGAGGAGCCGCCG
CGACGGATCATCGGCGGCGACGGCGGGCGGGAAGACTCGGCTGGACCACATCGGATTCGAGGACCTGAGGCGGTACTTCT
ACATGCCAATCACCAAGGCGGCGAGGGAGATGAACGTGGGGCTGACCGTGCTCAAGAAGCGCTGCCGCGAGCTCGGCGTC
GCCCGGTGGCCTCACCGGAAGATGAAGAGCCTCAAGTCCCTCATCCTCAACGAGATGGGGAGCAAGGGGATGTCGGCGGC
GGCGATGCGGCGGGAGCTGGAGGCGCTGGAGAATTGCTGCGCGCTGATGGAGAGGAACCCGGCGGTGGAGCTGACGGAGA
GGACCAAGAAGCTGAGGCAGGCGTGCTTCAAGGAGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis