Browse Element(s) Details


Os.15440.1.S1_at

Description gb:AK067932.1
DB_XREF= gi:32977950
TID=Os.15440.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15440 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0024F24.25 (OSJNBa0024F24.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013126J11, full insert sequence.
FL= gb:AK067932.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3705011/11RNase3 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37000Os.9827.1.S1_at11/111+20967828..20970726Carboxyl-terminal peptidase, putative, expressed
LOC_Os01g37000Os.9827.2.S1_x_at11/111+20967828..20970726Carboxyl-terminal peptidase, putative, expressed
LOC_Os01g37000Os.9827.1.S1_a_at11/111+20967828..20970726Carboxyl-terminal peptidase, putative, expressed
LOC_Os01g37020Os.9827.2.S1_x_at3/111+20978391..20981731hypothetical protein
LOC_Os01g37030NANA1+20983272..20983737hypothetical protein
LOC_Os01g37040Os.11844.1.S1_at11/111+20989840..20991860expressed protein
LOC_Os01g37050Os.15440.1.S1_at11/111+20992309..20997850RNase3 domain containing protein, expressed
LOC_Os01g37054NANA1+20998634..20999272NA
LOC_Os01g37060NANA1+21002911..21009660retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37070OsAffx.22492.1.S1_x_at1/111+21012162..21018509retrotransposon protein, putative, unclassified
LOC_Os01g37070OsAffx.22492.1.S1_at1/111+21012162..21018509retrotransposon protein, putative, unclassified
LOC_Os01g37080Os.31312.2.S1_x_at11/111+21019137..21022480retrotransposon protein, putative, unclassified
LOC_Os01g37080Os.31312.5.S1_x_at4/111+21019137..21022480retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0006396biological_processRNA processing
GO:0009880biological_processembryonic pattern specification
GO:0009908biological_processflower development
GO:0010098biological_processsuspensor development
GO:0010228biological_processvegetative to reproductive phase transition
GO:0030422biological_processRNA interference, production of siRNA
GO:0031053biological_processprimary microRNA processing
GO:0035279biological_processmiRNA-mediated gene silencing, mRNA cleavage
GO:0005634cellular_componentnucleus
GO:0003723molecular_functionRNA binding
GO:0003725molecular_functiondouble-stranded RNA binding
GO:0004525molecular_functionribonuclease III activity
GO:0005515molecular_functionprotein binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15440.1.S1_at--716--3071Chr01:20992771..20993279 (25 bp)
CAATCAGTGAACTAGCAGCCCATAT
LOC_Os01g37050
Os.15440.1.S1_at--103--8351Chr01:20992741..20992765 (25 bp)
GGCTGGATCTGAACTTTTGTGGGTC
LOC_Os01g37050
Os.15440.1.S1_at--1116--3571Chr01:20992706..20992730 (25 bp)
CATATTCATGTATTGCGCAGGCACT
LOC_Os01g37050
Os.15440.1.S1_at--841--931Chr01:20992688..20992712 (25 bp)
AGGCACTTCTATGCTATGCTAGCTC
LOC_Os01g37050
Os.15440.1.S1_at--220--9091Chr01:20992672..20992696 (25 bp)
TGCTAGCTCTGAACATTGATGCCTG
LOC_Os01g37050
Os.15440.1.S1_at--491--51Chr01:20992559..20992583 (25 bp)
ATTGATGTCTGGTACCCTGGTTATC
LOC_Os01g37050
Os.15440.1.S1_at--1051--7871Chr01:20992541..20992565 (25 bp)
GGTTATCAGGCCAAGCGTGTCCTAA
LOC_Os01g37050
Os.15440.1.S1_at--5--5251Chr01:20992453..20992477 (25 bp)
GAATCTGTGTTTGTACTCAACCAAT
LOC_Os01g37050
Os.15440.1.S1_at--86--6871Chr01:20992380..20992404 (25 bp)
GTTTGTTCATATGGACTTACTCTCA
LOC_Os01g37050
Os.15440.1.S1_at--456--5691Chr01:20992367..20992391 (25 bp)
GACTTACTCTCAGTGTCCTAGATAT
LOC_Os01g37050
Os.15440.1.S1_at--50--251Chr01:20992334..20992358 (25 bp)
ATATAGCTTTTCAGGTGGGCTCAGC
LOC_Os01g37050
Target Sequence 
CAATCAGTGAACTAGCAGCCCATATATAGTGGCTGGATCTGAACTTTTGTGGGTCAGGTATGGAACATATTCATGTATTG
CGCAGGCACTTCTATGCTATGCTAGCTCTGAACATTGATGCCTGGAGGTTTGTTTNATGGCATGTTCACTGCTAGATAGT
AGTAGCTGTGAAATCAATGTATGGCTATTGAAATTGATGCAGACCTGGTACTATTGATGTCTGGTACCCTGGTTATCAGG
CCAAGCGTGTCCTAATCTTGTCGAGCGATGAACACTATAGTGTATTTTGTCTTATGTACAATGGAGGTTTGTCATACTGA
ATCTGTGTTTGTACTCAACCAATGTATATGTAGAATACCATGTAAAGTAATATTATTAAAGAATGTGTGATGTTTGTTCA
TATGGACTTACTCTCAGTGTCCTAGATATGAAAGAGCATATAGCTTTTCAGGTGGGCTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis