Browse Element(s) Details


Os.24663.1.S1_s_at

Description gb:AK059134.1
DB_XREF= gi:32969152
TID=Os.24663.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24663 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-022-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-H04, full insert sequence.
FL= gb:AK059134.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5148011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51430Os.11055.1.S1_at11/112+31495160..31506551SEC6, putative, expressed
LOC_Os02g51440OsAffx.30603.3.S1_at11/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51440OsAffx.30603.2.S1_x_at1/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51440OsAffx.30603.4.S1_x_at1/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51450Os.52106.1.S1_at11/112+31515232..31517195mTERF family protein, expressed
LOC_Os02g51450Os.52106.2.S1_at11/112+31515232..31517195mTERF family protein, expressed
LOC_Os02g51460Os.50994.1.S1_at11/112+31517549..31518937mTERF family protein, expressed
LOC_Os02g51470Os.51517.1.A1_s_at11/112+31521055..31522660ATP synthase delta chain, chloroplast precursor, putative, expressed
LOC_Os02g51470Os.15071.2.S1_s_at11/112+31521055..31522660ATP synthase delta chain, chloroplast precursor, putative, expressed
LOC_Os02g51480Os.24663.1.S1_s_at11/112+31523730..31525984pentatricopeptide, putative, expressed
LOC_Os02g51490Os.49186.1.S1_at11/112+31526241..31529003expressed protein
LOC_Os02g51500Os.16541.1.S1_at10/112+31529444..31532901NTGP5, putative, expressed
LOC_Os02g51510OsAffx.24825.1.S1_at11/112+31538227..31538910hypothetical protein
LOC_Os02g51520NANA2+31546653..31552806retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24663.1.S1_s_at--813--11Chr02:31525386..31525410 (25 bp)
ATTGCTTTACAAGGCCTACACCAAA
LOC_Os02g51480
Os.24663.1.S1_s_at--507--2531Chr02:31525453..31525477 (25 bp)
AACTCACAGGGTATTGTTCCAAATA
LOC_Os02g51480
Os.24663.1.S1_s_at--790--8011Chr02:31525500..31525524 (25 bp)
GGAGGCATTTGGCAACACTGACAAG
LOC_Os02g51480
Os.24663.1.S1_s_at--604--7951Chr02:31525532..31525556 (25 bp)
GGACGGTACCCAGCAAAAACTCTGC
LOC_Os02g51480
Os.24663.1.S1_s_at--954--8171Chr02:31525591..31525615 (25 bp)
GGAACTGACACTTCAAGCAAGCCAA
LOC_Os02g51480
Os.24663.1.S1_s_at--201--1231Chr02:31525659..31525683 (25 bp)
AGTTCTTACAAGCTCATACTCTGCG
LOC_Os02g51480
Os.24663.1.S1_s_at--712--6611Chr02:31525762..31525786 (25 bp)
GATTGGCTCATAACGCAGTTTTCTT
LOC_Os02g51480
Os.24663.1.S1_s_at--171--3871Chr02:31525797..31525821 (25 bp)
CTGAGATCTTTTGTGCGTCGGCTAA
LOC_Os02g51480
Os.24663.1.S1_s_at--500--7191Chr02:31525813..31525837 (25 bp)
GTCGGCTAATGCTGCTTGTAGTCTT
LOC_Os02g51480
Os.24663.1.S1_s_at--742--3651Chr02:31525889..31525913 (25 bp)
CTTCTTTTTTGTTCAGCTCCTCTTT
LOC_Os02g51480
Os.24663.1.S1_s_at--30--2671Chr02:31525925..31525949 (25 bp)
AAGCCTGCAATTCTGTCTGTCAGTA
LOC_Os02g51480
Target Sequence 
ATTGCTTTACAAGGCCTACACCAAAGCAAACGACAAGAAGCTTATTCAGAAGTTGCTCAAACGGATGAACTCACAGGGTA
TTGTTCCAAATAAAAAGTTCTTCTTGGATGCTTTGGAGGCATTTGGCAACACTGACAAGAAACCCCGGACGGTACCCAGC
AAAAACTCTGCAAGCAAGCCAGATGTGGAGTCCGCAAACAATTCTGGAACTGACACTTCAAGCAAGCCAAATTTAAGCGT
TTGGCAAGTTGCTGCGTGATGGGGCGGTCAGTTAGTTCTTACAAGCTCATACTCTGCGTTGCCTGACAGCNCGGAGAATG
CAATTAATTTATCTNTAAAACTGTCTATAGCAGTATCTTTGGAGATACGAGCGATTGATTGGCTCATAACGCAGTTTTCT
TTATGNGAATGCTGAGATCTTTTGTGCGTCGGCTAATGCTGCTTGTAGTCTTGTAGATTTCATAGTTGNGTTGTAAAATC
AGCATAGGGGTTTCTTTTTTTTCCTTCTTTTTTGTTCAGCTCCTCTTTNGNATAGCTGCAAGCCTGCAATTCTGTCTGTC
AGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24663.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis