Browse Element(s) Details


Os.51517.1.A1_s_at

Description gb:AK062994.1
DB_XREF= gi:32973012
TID=Os.51517.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51517 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-G06, full insert sequence.
FL= gb:AK062994.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5147011/11ATP synthase delta chain, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51430Os.11055.1.S1_at11/112+31495160..31506551SEC6, putative, expressed
LOC_Os02g51440OsAffx.30603.3.S1_at11/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51440OsAffx.30603.2.S1_x_at1/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51440OsAffx.30603.4.S1_x_at1/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51450Os.52106.1.S1_at11/112+31515232..31517195mTERF family protein, expressed
LOC_Os02g51450Os.52106.2.S1_at11/112+31515232..31517195mTERF family protein, expressed
LOC_Os02g51460Os.50994.1.S1_at11/112+31517549..31518937mTERF family protein, expressed
LOC_Os02g51470Os.51517.1.A1_s_at11/112+31521055..31522660ATP synthase delta chain, chloroplast precursor, putative, expressed
LOC_Os02g51470Os.15071.2.S1_s_at11/112+31521055..31522660ATP synthase delta chain, chloroplast precursor, putative, expressed
LOC_Os02g51480Os.24663.1.S1_s_at11/112+31523730..31525984pentatricopeptide, putative, expressed
LOC_Os02g51490Os.49186.1.S1_at11/112+31526241..31529003expressed protein
LOC_Os02g51500Os.16541.1.S1_at10/112+31529444..31532901NTGP5, putative, expressed
LOC_Os02g51510OsAffx.24825.1.S1_at11/112+31538227..31538910hypothetical protein
LOC_Os02g51520NANA2+31546653..31552806retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000275cellular_componentproton-transporting ATP synthase complex, catalytic core F(1) (sensu Eukaryota)
GO:0005739cellular_componentmitochondrion
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51517.1.A1_s_at--1001--10791Chr02:31522346..31522370 (25 bp)
TTGTCACAGGGAATCTCGAAGGCTT
LOC_Os02g51470
Os.51517.1.A1_s_at--589--8291Chr02:31522366..31522390 (25 bp)
GGCTTGTCAAGAATGCTGGTCCTCA
LOC_Os02g51470
Os.51517.1.A1_s_at--640--9251Chr02:31522385..31522409 (25 bp)
TCCTCATCCCCTTCAGAACTGAAGA
LOC_Os02g51470
Os.51517.1.A1_s_at--524--8011Chr02:31522419..31522443 (25 bp)
GGAGGCTCAAATACATATGACGATC
LOC_Os02g51470
Os.51517.1.A1_s_at--623--5771Chr02:31522437..31522461 (25 bp)
GACGATCACGACAACATTCTTTTCT
LOC_Os02g51470
Os.51517.1.A1_s_at--855--9553Chr02:31522454..31522478 (25 bp)
TCTTTTCTGCATTTCTTTTCATTTT
LOC_Os02g51470
Os.51517.1.A1_s_at--653--9531Chr02:31522467..31522491 (25 bp)
TCTTTTCATTTTTTGGCCGGAGCCA
LOC_Os02g51470
Os.51517.1.A1_s_at--271--8431Chr02:31522481..31522505 (25 bp)
GGCCGGAGCCAATGTAATTCTCTTT
LOC_Os02g51470
Os.51517.1.A1_s_at--1130--8731Chr02:31522493..31522517 (25 bp)
TGTAATTCTCTTTTCTTTCGTTGCC
LOC_Os02g51470
Os.51517.1.A1_s_at--1018--3711Chr02:31522538..31522562 (25 bp)
CTAAACTATAGCGAGGCTGCTCCTC
LOC_Os02g51470
Os.51517.1.A1_s_at--43--4291Chr02:31522559..31522583 (25 bp)
CCTCCATTATGTACCTGCCGATAGA
LOC_Os02g51470
Target Sequence 
TTGTCACAGGGAATCTCGAAGGCTTGTCAAGAATGCTGGTCCTCATCCCCTTCAGAACTGAAGATATAATGGAGGAGGCT
CAAATACATATGACGATCACGACAACATTCTTTTCTGCATTTCTTTTCATTTTTTGGCCGGAGCCAATGTAATTCTCTTT
TCTTTCGTTGCCCNNGTAATTTGCTTCAAATACTAAACTATAGCGAGGCTGCTCCTCCATTATGTACCTGCCGATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51517.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis