Browse Element(s) Details


Os.16541.1.S1_at

Description gb:AK066145.1
DB_XREF= gi:32976163
TID=Os.16541.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16541 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-034-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056J19, full insert sequence.
FL= gb:AK066145.1 gb:AK104356.1 gb:AK104230.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5150010/11NTGP5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51430Os.11055.1.S1_at11/112+31495160..31506551SEC6, putative, expressed
LOC_Os02g51440OsAffx.30603.3.S1_at11/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51440OsAffx.30603.2.S1_x_at1/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51440OsAffx.30603.4.S1_x_at1/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51450Os.52106.1.S1_at11/112+31515232..31517195mTERF family protein, expressed
LOC_Os02g51450Os.52106.2.S1_at11/112+31515232..31517195mTERF family protein, expressed
LOC_Os02g51460Os.50994.1.S1_at11/112+31517549..31518937mTERF family protein, expressed
LOC_Os02g51470Os.51517.1.A1_s_at11/112+31521055..31522660ATP synthase delta chain, chloroplast precursor, putative, expressed
LOC_Os02g51470Os.15071.2.S1_s_at11/112+31521055..31522660ATP synthase delta chain, chloroplast precursor, putative, expressed
LOC_Os02g51480Os.24663.1.S1_s_at11/112+31523730..31525984pentatricopeptide, putative, expressed
LOC_Os02g51490Os.49186.1.S1_at11/112+31526241..31529003expressed protein
LOC_Os02g51500Os.16541.1.S1_at10/112+31529444..31532901NTGP5, putative, expressed
LOC_Os02g51510OsAffx.24825.1.S1_at11/112+31538227..31538910hypothetical protein
LOC_Os02g51520NANA2+31546653..31552806retrotransposon protein, putative, unclassified
LOC_Os02g51530Os.31312.5.S1_x_at4/112+31553433..31556693retrotransposon protein, putative, unclassified
LOC_Os02g51530Os.31312.2.S1_x_at3/112+31553433..31556693retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16541.1.S1_at--346--3511Chr02:31530814..31530838 (25 bp)
CATGTGGTAGTACGCCCTCCACAAC
LOC_Os02g51500
Os.16541.1.S1_at--989--9131Chr02:31529930..31529954 (25 bp)
TGCGAATTCCCCCAAGCAGAACAGA
LOC_Os02g51500
Os.16541.1.S1_at--1111--2711Chr02:31529917..31529941 (25 bp)
AAGCAGAACAGATGTGGGTGTACCA
LOC_Os02g51500
Os.16541.1.S1_at--793--4811Chr02:31529849..31529873 (25 bp)
GCTCTAGGATTTTGTATCTGCTTTC
LOC_Os02g51500
Os.16541.1.S1_at--1073--6891Chr02:31529836..31529860 (25 bp)
GTATCTGCTTTCCTGTGTTCGCAGC
LOC_Os02g51500
Os.16541.1.S1_at--59--8691Chr02:31529808..31529832 (25 bp)
TGTGAATTCATTTTGACATCCAATT
LOC_Os02g51500
Os.16541.1.S1_at--145--5671Chr02:31529794..31529818 (25 bp)
GACATCCAATTTTAGAGCCATTCAA
LOC_Os02g51500
Os.16541.1.S1_at--444--5591Chr02:31529763..31529787 (25 bp)
GAAATATACATACTTTAACACCCGT
LOC_Os02g51500
Os.16541.1.S1_at--1063--9871Chr02:31529757..31529781 (25 bp)
TACATACTTTAACACCCGTCAAATA
LOC_Os02g51500
Os.16541.1.S1_at--217--731Chr02:31529680..31529704 (25 bp)
ATGTTGTAACGAGTGTGCAGAAGAC
LOC_Os02g51500
Os.16541.1.S1_at--807--291Chr02:31529444..31529468 (25 bp)
ATAGAATCTGTCCTATAGTTATCCC
NONE
Target Sequence 
CATGTGGTAGTACGCCCTCCACAACCCGACAAAAACAGTGAGAAGCAGCTTGCGAATTCCCCCAAGCAGAACAGATGTGG
GTGTACCATACTGTGATACGCCGCCTGCCTGATGATGATGTACAATGTCTNGCTCTAGGATTTTGTATCTGCTTTCCTGT
GTTCGCAGCTCTTGTGAATTCATTTTGACATCCAATTTTAGAGCCATTCAAATCCTAGAAATATACATACTTTAACACCC
GTCAAATATGCTTGGGAGCTGGAACTGAAGGTTTCTGGAGGATGCGTCATGGTGATCTTAATGTTGTAACGAGTGTGCAG
AAGACAGGGATTGGATGCTTTCTGTTGTATAAATTGTAATGTGAAAACGAAAAAAATTCTCTCCTTNNNTTTCTTTTTTC
TCTTGCCACATTGACATTTTATCGATTCTTTTTAGCACTGGTGTTTGTCATGTAAAACCAGAATATTGTACTCATATATG
TAAGCTGANAAAAAGGGGTGTTTTATTCTGTTANNNNNANNGAAAAAGGAAAGAAAAAAAATAGAATCTGTCCTATAGTT
ATCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16541.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis