Browse Element(s) Details


Os.11055.1.S1_at

Description gb:AK119455.1
DB_XREF= gi:37989078
TID=Os.11055.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11055 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-133-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-133-E02, full insert sequence.
FL= gb:AK119455.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5143011/11SEC6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51400NANA2+31467100..31477064ATPase, AAA family protein, expressed
LOC_Os02g51410Os.5463.1.S1_at11/112+31485830..31488484shikimate kinase, chloroplast precursor, putative, expressed
LOC_Os02g51414NANA2+31489306..31489886expressed protein
LOC_Os02g51420Os.5743.1.S1_at11/112+31491247..31492852expressed protein
LOC_Os02g51430Os.11055.1.S1_at11/112+31495160..31506551SEC6, putative, expressed
LOC_Os02g51440OsAffx.30603.3.S1_at11/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51440OsAffx.30603.2.S1_x_at1/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51440OsAffx.30603.4.S1_x_at1/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51450Os.52106.1.S1_at11/112+31515232..31517195mTERF family protein, expressed
LOC_Os02g51450Os.52106.2.S1_at11/112+31515232..31517195mTERF family protein, expressed
LOC_Os02g51460Os.50994.1.S1_at11/112+31517549..31518937mTERF family protein, expressed
LOC_Os02g51470Os.51517.1.A1_s_at11/112+31521055..31522660ATP synthase delta chain, chloroplast precursor, putative, expressed
LOC_Os02g51470Os.15071.2.S1_s_at11/112+31521055..31522660ATP synthase delta chain, chloroplast precursor, putative, expressed
LOC_Os02g51480Os.24663.1.S1_s_at11/112+31523730..31525984pentatricopeptide, putative, expressed
LOC_Os02g51490Os.49186.1.S1_at11/112+31526241..31529003expressed protein
LOC_Os02g51500Os.16541.1.S1_at10/112+31529444..31532901NTGP5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11055.1.S1_at--127--7331Chr02:31496205..31496229 (25 bp)
GTGCTTATGGATTTTTTCAGAGAAC
LOC_Os02g51430
Os.11055.1.S1_at--459--1331Chr02:31495954..31495978 (25 bp)
AGAGTGCGGATTCTGGCTGATCTAA
LOC_Os02g51430
Os.11055.1.S1_at--178--4931Chr02:31495925..31495949 (25 bp)
GCTTGCTTCAGCTGAGAGTCTGGAT
LOC_Os02g51430
Os.11055.1.S1_at--970--3731Chr02:31495420..31495444 (25 bp)
CTAACAGCACGGAAAGGCATATGGA
LOC_Os02g51430
Os.11055.1.S1_at--737--2931Chr02:31495407..31495431 (25 bp)
AAGGCATATGGAGCAAGCTTGGACA
LOC_Os02g51430
Os.11055.1.S1_at--804--4591Chr02:31495370..31495394 (25 bp)
GCGACTTTCGAGTAGAGTGAATTCA
LOC_Os02g51430
Os.11055.1.S1_at--298--10511Chr02:31495349..31495373 (25 bp)
TTCACGCCCTAAGAGAATTGTTTCA
LOC_Os02g51430
Os.11055.1.S1_at--95--10431Chr02:31495288..31495312 (25 bp)
TTATGGTATTGTCACCATGCCCTTG
LOC_Os02g51430
Os.11055.1.S1_at--158--7111Chr02:31495278..31495302 (25 bp)
GTCACCATGCCCTTGTGTGATTTTT
LOC_Os02g51430
Os.11055.1.S1_at--289--10351Chr02:31495257..31495281 (25 bp)
TTTTTGCACGGGAAGAGCTTAGGGT
LOC_Os02g51430
Os.11055.1.S1_at--1010--4871Chr02:31495241..31495265 (25 bp)
GCTTAGGGTGTATATTCTCGTTGGT
LOC_Os02g51430
Target Sequence 
GTGCTTATGGATTTTTTCAGAGAACACATTAATGTGACAAAAGNTGAAACCAGAGTGCGGATTCTGGCTGATCTAANGGA
GCTTGCTTCAGCTGAGAGTCTGGATAGNTTTACTCTCATTTATACAAATATTCTGGAACATCAACCAGATTGNCCGCCTG
AGGTTGNTGANAAGCTTGTGGGAATGAGGGAAGGCATTCCAAGGAAGGANNCCAAAGAGGNTGTNCAAGAGNGCANGGAA
ATATACGAGAACTCTNTTGTANACGGGAACCCTCAAAAGTCNGGTTTTGNGTTTGGCAAATNGAAGTGCCTAACAGCACG
GAAAGGCATATGGAGCAAGCTTGGACAGTAAATNATGCNGCGACTTTCGAGTAGAGTGAATTCACGCCCTAAGAGAATTG
TTTCATGTTCATGTGATAATTCTTTTGTTCATTTGTTAAGCTTATGGTATTGTCACCATGCCCTTGTGTGATTTTTTGCA
CGGGAAGAGCTTAGGGTGTATATTCTCGTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11055.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis