Browse Element(s) Details


Os.5463.1.S1_at

Description gb:AK066687.1
DB_XREF= gi:32976705
TID=Os.5463.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5463 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074E04, full insert sequence.
FL= gb:AK066687.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5141011/11shikimate kinase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51390Os.24562.1.S1_at11/112+31461533..31465667expressed protein
LOC_Os02g51400NANA2+31467100..31477064ATPase, AAA family protein, expressed
LOC_Os02g51410Os.5463.1.S1_at11/112+31485830..31488484shikimate kinase, chloroplast precursor, putative, expressed
LOC_Os02g51414NANA2+31489306..31489886expressed protein
LOC_Os02g51420Os.5743.1.S1_at11/112+31491247..31492852expressed protein
LOC_Os02g51430Os.11055.1.S1_at11/112+31495160..31506551SEC6, putative, expressed
LOC_Os02g51440OsAffx.30603.3.S1_at11/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51440OsAffx.30603.2.S1_x_at1/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51440OsAffx.30603.4.S1_x_at1/112+31509649..31511796Multicopper oxidase family protein

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Gene Ontology Classification
GO idTypeName
GO:0016089biological_processaromatic amino acid family biosynthesis, shikimate pathway
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5463.1.S1_at--715--3071Chr02:31487682..31487706 (25 bp)
AATCAGTCAATATAGGCTCATTCAT
LOC_Os02g51410
Os.5463.1.S1_at--723--5171Chr02:31487728..31487752 (25 bp)
GCAAGTATGATCCTGCACATCTGCA
LOC_Os02g51410
Os.5463.1.S1_at--844--5111Chr02:31487742..31487766 (25 bp)
GCACATCTGCACAACTGGTAGTGTA
LOC_Os02g51410
Os.5463.1.S1_at--1017--7071Chr02:31487764..31487788 (25 bp)
GTAATTCTTTCATTTCAGTGCTAGT
LOC_Os02g51410
Os.5463.1.S1_at--119--10131Chr02:31487788..31487812 (25 bp)
TATGAGTTGCTCACTGGATTCTTCC
LOC_Os02g51410
Os.5463.1.S1_at--273--7931Chr02:31487803..31487827 (25 bp)
GGATTCTTCCTATCTTAGGCTTTTT
LOC_Os02g51410
Os.5463.1.S1_at--1104--10731Chr02:31488259..31488283 (25 bp)
TTGACAATCCGGTTGGTGACTCCCA
LOC_Os02g51410
Os.5463.1.S1_at--436--5711Chr02:31488288..31488312 (25 bp)
GACTCACGTGCTCAGAGGATACAGA
LOC_Os02g51410
Os.5463.1.S1_at--809--6971Chr02:31488337..31488361 (25 bp)
GTACCTTAGTGTTACCTTGTAGCGC
LOC_Os02g51410
Os.5463.1.S1_at--609--9971Chr02:31488349..31488373 (25 bp)
TACCTTGTAGCGCTGTTGAGTTATT
LOC_Os02g51410
Os.5463.1.S1_at--134--6071Chr02:31488366..31488390 (25 bp)
GAGTTATTTGTTCGTTGTACCGACA
LOC_Os02g51410
Target Sequence 
AATCAGTCAATATAGGCTCATTCATTCAATGTAGAAATGAAAAACTGCAAGTATGATCCTGCACATCTGCACAACTGGTA
GTGTAATTCTTTCATTTCAGTGCTAGTATGAGTTGCTCACTGGATTCTTCCTATCTTAGGCTTTTTCTAAACTCAGCATG
CTCGCGGAGCAAAGGGGCGATGCTTATGCAAATGCTGATGTGAGGGTTTCTCTTGAAGAGATTGCATCTAAACAGGGTCA
TGATGATGTATCGAAGCTAACACCAACTGACATTGCTATTGAGTCGTTTCATAAGATCGAGAACTTTGTCATTGAACATA
CCGTTGACAATCCGGTTGGTGACTCCCAGGCTGACTCACGTGCTCAGAGGATACAGACCTTGTAGAATTTTGATCTTTTT
TGTACCTTAGTGTTACCTTGTAGCGCTGTTGAGTTATTTGTTCGTTGTACCGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5463.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis