Browse Element(s) Details


OsAffx.30603.3.S1_at

Description tigr:9630.m05054
TID=OsAffx.30603.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=diphenol oxidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5144011/11Multicopper oxidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51410Os.5463.1.S1_at11/112+31485830..31488484shikimate kinase, chloroplast precursor, putative, expressed
LOC_Os02g51414NANA2+31489306..31489886expressed protein
LOC_Os02g51420Os.5743.1.S1_at11/112+31491247..31492852expressed protein
LOC_Os02g51430Os.11055.1.S1_at11/112+31495160..31506551SEC6, putative, expressed
LOC_Os02g51440OsAffx.30603.3.S1_at11/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51440OsAffx.30603.2.S1_x_at1/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51440OsAffx.30603.4.S1_x_at1/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51450Os.52106.1.S1_at11/112+31515232..31517195mTERF family protein, expressed
LOC_Os02g51450Os.52106.2.S1_at11/112+31515232..31517195mTERF family protein, expressed
LOC_Os02g51460Os.50994.1.S1_at11/112+31517549..31518937mTERF family protein, expressed
LOC_Os02g51470Os.51517.1.A1_s_at11/112+31521055..31522660ATP synthase delta chain, chloroplast precursor, putative, expressed
LOC_Os02g51470Os.15071.2.S1_s_at11/112+31521055..31522660ATP synthase delta chain, chloroplast precursor, putative, expressed
LOC_Os02g51480Os.24663.1.S1_s_at11/112+31523730..31525984pentatricopeptide, putative, expressed
LOC_Os02g51490Os.49186.1.S1_at11/112+31526241..31529003expressed protein
LOC_Os02g51500Os.16541.1.S1_at10/112+31529444..31532901NTGP5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30603.3.S1_at--415--5811Chr02:31510314..31510338 (25 bp)
GACCCCACCAACATGGCAGAGAAGT
LOC_Os02g51440
OsAffx.30603.3.S1_at--441--1351Chr02:31510297..31510321 (25 bp)
AGAGAAGTGCAAAGAAGGACCCCAA
LOC_Os02g51440
OsAffx.30603.3.S1_at--373--7351Chr02:31510291..31510315 (25 bp)
GTGCAAAGAAGGACCCCAAGGCAAC
LOC_Os02g51440
OsAffx.30603.3.S1_at--253--4091Chr02:31510210..31510234 (25 bp)
CGACGCCTACTACTATAGCTCTGGC
LOC_Os02g51440
OsAffx.30603.3.S1_at--652--9891Chr02:31510203..31510227 (25 bp)
TACTACTATAGCTCTGGCCACGGCG
LOC_Os02g51440
OsAffx.30603.3.S1_at--731--291Chr02:31510196..31510220 (25 bp)
ATAGCTCTGGCCACGGCGTGTACGA
LOC_Os02g51440
OsAffx.30603.3.S1_at--1054--7011Chr02:31510128..31510152 (25 bp)
GTCAACAACGGCAGTGGGCCCTTGA
LOC_Os02g51440
OsAffx.30603.3.S1_at--443--3451Chr02:31510117..31510141 (25 bp)
CAGTGGGCCCTTGATGACGAAGCGT
LOC_Os02g51440
OsAffx.30603.3.S1_at--678--4051Chr02:31509978..31510002 (25 bp)
CGAGGGAACGGCACCTTCGACGAGA
LOC_Os02g51440
OsAffx.30603.3.S1_at--787--1931Chr02:31509971..31509995 (25 bp)
ACGGCACCTTCGACGAGAGCAGGGA
LOC_Os02g51440
OsAffx.30603.3.S1_at--717--5491Chr02:31509910..31509934 (25 bp)
GAACACGGTCTCTGTGCCCAGGTCC
LOC_Os02g51440
Target Sequence 
GACCCCACCAACATGGCAGAGAAGTGCAAAGAAGGACCCCAAGGCAACCGGTTCGCGGCGAGCCTCAACAATGTTAGCTT
CCAGAGCCCGGCTATCGACGTCCTCGACGCCTACTACTATAGCTCTGGCCACGGCGTGTACGAGGAGGACTTCCCCAACA
AGCCGACAGCCTTCGTCGACCCGCCCGTCAACAACGGCAGTGGGCCCTTGATGACGAAGCGTGGCACCAAGGTGAAGGTG
CTGGAGTACGGCACTGTGGTAGAGGTGGTGTTTCATGACTTGTCCAGCGAGAACCACCCTATGCATCTGCATGGCTTCGC
CTTCTACGTCGTGGGACGAGGGAACGGCACCTTCGACGAGAGCAGGGACCCGGCGACCTACAACCTCGTTGACCCGCCGT
TCCAGAACACGGTCTCTGTGCCCAGGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30603.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis