Browse Element(s) Details


Os.50994.1.S1_at

Description gb:AK103427.1
DB_XREF= gi:32988636
TID=Os.50994.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50994 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033128L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033128L17, full insert sequence.
FL= gb:AK060034.1 gb:AK103427.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5146011/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51420Os.5743.1.S1_at11/112+31491247..31492852expressed protein
LOC_Os02g51430Os.11055.1.S1_at11/112+31495160..31506551SEC6, putative, expressed
LOC_Os02g51440OsAffx.30603.3.S1_at11/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51440OsAffx.30603.2.S1_x_at1/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51440OsAffx.30603.4.S1_x_at1/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51450Os.52106.1.S1_at11/112+31515232..31517195mTERF family protein, expressed
LOC_Os02g51450Os.52106.2.S1_at11/112+31515232..31517195mTERF family protein, expressed
LOC_Os02g51460Os.50994.1.S1_at11/112+31517549..31518937mTERF family protein, expressed
LOC_Os02g51470Os.51517.1.A1_s_at11/112+31521055..31522660ATP synthase delta chain, chloroplast precursor, putative, expressed
LOC_Os02g51470Os.15071.2.S1_s_at11/112+31521055..31522660ATP synthase delta chain, chloroplast precursor, putative, expressed
LOC_Os02g51480Os.24663.1.S1_s_at11/112+31523730..31525984pentatricopeptide, putative, expressed
LOC_Os02g51490Os.49186.1.S1_at11/112+31526241..31529003expressed protein
LOC_Os02g51500Os.16541.1.S1_at10/112+31529444..31532901NTGP5, putative, expressed
LOC_Os02g51510OsAffx.24825.1.S1_at11/112+31538227..31538910hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50994.1.S1_at--624--391Chr02:31518358..31518382 (25 bp)
ATCAGCCCAGTGAGGGTCAGCGCAA
LOC_Os02g51460
Os.50994.1.S1_at--476--1292Chr02:31518417..31518441 (25 bp)
AGATGCCCAGCTACACATTGCGGTG
LOC_Os02g51460
Os.50994.1.S1_at--126--71Chr02:31518433..31518457 (25 bp)
ATTGCGGTGTCTAGGTTTCCACTAA
LOC_Os02g51460
Os.50994.1.S1_at--177--6851Chr02:31518447..31518471 (25 bp)
GTTTCCACTAATCCTGACATACTCA
LOC_Os02g51460
Os.50994.1.S1_at--1092--7911Chr02:31518518..31518542 (25 bp)
GGTTGGAGCCTCAGTACATTGTGCT
LOC_Os02g51460
Os.50994.1.S1_at--316--8451Chr02:31518545..31518569 (25 bp)
GGCCAGCATTGCTCGGCTATAGCAT
LOC_Os02g51460
Os.50994.1.S1_at--641--6351Chr02:31518582..31518606 (25 bp)
GATGCCGCGTTATCATGTCATGAAG
LOC_Os02g51460
Os.50994.1.S1_at--326--1711Chr02:31518704..31518728 (25 bp)
ACCACAGGTCTGTTCCAGGACTTGA
LOC_Os02g51460
Os.50994.1.S1_at--1086--2691Chr02:31518731..31518755 (25 bp)
AAGCTTATCTGGCTGCCCGTGAAGG
LOC_Os02g51460
Os.50994.1.S1_at--999--8011Chr02:31518790..31518814 (25 bp)
GGAGGTTTATTCTGCCTAGGAACTT
LOC_Os02g51460
Os.50994.1.S1_at--903--10331Chr02:31518913..31518937 (25 bp)
TTTAGTGCACTCTTGTTCTCATTTT
LOC_Os02g51460
Target Sequence 
ATCAGCCCAGTGAGGGTCAGCGCAAAACTTGATTTCTTGAGGATGGTTATTGGATGCTCAGATGCCCAGCTACACATTGC
GGTGTCTAGGTTTCCACTAATCCTGACATACTCAGAAGTTAAGCTGAGCCGCTCACTGGAATTCCTGAAAGCGGAGGTTG
GGTTGGAGCCTCAGTACATTGTGCTCCGGCCAGCATTGCTCGGCTATAGCATTCAGAAACGGCTGATGCCGCGTTATCAT
GTCATGAAGGTTCTGAATGAAAAGGGCCTGCTGAAGAAAGACACTGATTTTTACTCTATGGTTAAAATAGTTGAAGAGAG
CTTTTTTAAGAAGTTCCTTCTCCCATACCACAGGTCTGTTCCAGGACTTGAAAAAGCTTATCTGGCTGCCCGTGAAGGGA
AAATGTTTCCTGAAATCTAAAACAGAGATGCTGGAGGTTTATTCTGCCTAGGAACTTGATAATGTTCTGCATTTTACATC
TTGCTCAGTTCTTAGATGATTTCTAGCGATCTGTATTTGTGATTTCATCTGTGCTTTTTGAGACAAACATCTAATTTTAG
TGCACTCTTGTTCTCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis