Browse Element(s) Details


Os.5743.1.S1_at

Description gb:CB652609
DB_XREF= gi:29656334
DB_XREF=OSJNEc02M22.r
CLONE=OSJNEc02M22
TID=Os.5743.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5743 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_564521.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5142011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51400NANA2+31467100..31477064ATPase, AAA family protein, expressed
LOC_Os02g51410Os.5463.1.S1_at11/112+31485830..31488484shikimate kinase, chloroplast precursor, putative, expressed
LOC_Os02g51414NANA2+31489306..31489886expressed protein
LOC_Os02g51420Os.5743.1.S1_at11/112+31491247..31492852expressed protein
LOC_Os02g51430Os.11055.1.S1_at11/112+31495160..31506551SEC6, putative, expressed
LOC_Os02g51440OsAffx.30603.3.S1_at11/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51440OsAffx.30603.2.S1_x_at1/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51440OsAffx.30603.4.S1_x_at1/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51450Os.52106.1.S1_at11/112+31515232..31517195mTERF family protein, expressed
LOC_Os02g51450Os.52106.2.S1_at11/112+31515232..31517195mTERF family protein, expressed
LOC_Os02g51460Os.50994.1.S1_at11/112+31517549..31518937mTERF family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5743.1.S1_at--685--8611Chr02:31492259..31492283 (25 bp)
TGGTGGCAGTCTCAGCTATTTGGAT
LOC_Os02g51420
Os.5743.1.S1_at--81--231Chr02:31492242..31492266 (25 bp)
ATTTGGATTGCCCTTCTTGAAACCG
LOC_Os02g51420
Os.5743.1.S1_at--1109--1771Chr02:31492221..31492245 (25 bp)
ACCGCGACTGTTCCTCGAAGTTATA
LOC_Os02g51420
Os.5743.1.S1_at--73--2831Chr02:31492109..31492228 (25 bp)
AAGTTATACTTGGTTGCTTCCCATC
LOC_Os02g51420
Os.5743.1.S1_at--708--4911Chr02:31492094..31492118 (25 bp)
GCTTCCCATCTACTTGGTAGTGGCA
LOC_Os02g51420
Os.5743.1.S1_at--585--5111Chr02:31492072..31492096 (25 bp)
GCACTTGGATGCTATGGCCTTTTTA
LOC_Os02g51420
Os.5743.1.S1_at--706--10691Chr02:31492016..31492040 (25 bp)
TTGCCCGCAAGAAGCTGTACTACTA
LOC_Os02g51420
Os.5743.1.S1_at--345--5611Chr02:31491513..31491537 (25 bp)
GACAACTTTGTGCTCCCTTATATGA
LOC_Os02g51420
Os.5743.1.S1_at--761--7751Chr02:31491417..31491441 (25 bp)
GGTGAGTCCTTGTTACATACTGAAT
LOC_Os02g51420
Os.5743.1.S1_at--674--8771Chr02:31491296..31491320 (25 bp)
TGTTTGTCTCCTCATTTCTGGATTT
LOC_Os02g51420
Os.5743.1.S1_at--612--10611Chr02:31491282..31491305 (24 bp)
TTCTGGATTTCCCTCTAGTGGTTAG
LOC_Os02g51420
Target Sequence 
TGGTGGCAGTCTCAGCTATTTGGATTGCCCTTCTTGAAACCGCGACTGTTCCTCGAAGTTATACTTGGTTGCTTCCCATC
TACTTGGTAGTGGCACTTGGATGCTATGGCCTTTTTATGGTTGGATTTGGGCTTATGTTCTTCCCAACTTGCCCGCAAGA
AGCTGTACTACTACAGCAGGATATCTTGGAGGCAAAGGAATTCCTATCAAAGAAAGGTGTTGATGTTGGCTCTGAATAAT
GTCAAGATCGATGATAGATGACTTGAGGCTAGTTTGGGGACAACTTTGTGCTCCCTTATATGAGTTGTTTTGGGGGCTTT
ATAGCTAGGTATATGTCACTTCGTAATGATCATTTTGCTAACACAATTTTTCATGGTGAGTCCTTGTTACATACTGAATT
TAAGACCTTTTTCTTTTAGGAAATATTTTTTATGNAAAATGAAATATGATTGTGAAGTAGGAATGGTCTGTTGACAAGTG
CATTACTNTTCAGGGTGTTTGTCTCCTCATTTCTGGATTTCCCTCTAGTGGTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis