Browse Element(s) Details


Os.52106.2.S1_at

Description gb:AK064731.1
DB_XREF= gi:32974749
TID=Os.52106.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52106 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-B08, full insert sequence.
FL= gb:AK064731.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5145011/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51420Os.5743.1.S1_at11/112+31491247..31492852expressed protein
LOC_Os02g51430Os.11055.1.S1_at11/112+31495160..31506551SEC6, putative, expressed
LOC_Os02g51440OsAffx.30603.3.S1_at11/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51440OsAffx.30603.2.S1_x_at1/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51440OsAffx.30603.4.S1_x_at1/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51450Os.52106.1.S1_at11/112+31515232..31517195mTERF family protein, expressed
LOC_Os02g51450Os.52106.2.S1_at11/112+31515232..31517195mTERF family protein, expressed
LOC_Os02g51460Os.50994.1.S1_at11/112+31517549..31518937mTERF family protein, expressed
LOC_Os02g51470Os.51517.1.A1_s_at11/112+31521055..31522660ATP synthase delta chain, chloroplast precursor, putative, expressed
LOC_Os02g51470Os.15071.2.S1_s_at11/112+31521055..31522660ATP synthase delta chain, chloroplast precursor, putative, expressed
LOC_Os02g51480Os.24663.1.S1_s_at11/112+31523730..31525984pentatricopeptide, putative, expressed
LOC_Os02g51490Os.49186.1.S1_at11/112+31526241..31529003expressed protein
LOC_Os02g51500Os.16541.1.S1_at10/112+31529444..31532901NTGP5, putative, expressed
LOC_Os02g51510OsAffx.24825.1.S1_at11/112+31538227..31538910hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52106.2.S1_at--170--2971Chr02:31516519..31516782 (25 bp)
AATGGAGGCTTACACTCTAGCTGGC
LOC_Os02g51450
Os.52106.2.S1_at--665--9531Chr02:31516773..31516797 (25 bp)
TCTAGCTGGCTTCTGGCATGATCAG
LOC_Os02g51450
Os.52106.2.S1_at--472--4631Chr02:31516797..31516821 (25 bp)
GCGATCACGATGTCCTGATGTGCAT
LOC_Os02g51450
Os.52106.2.S1_at--249--6271Chr02:31516813..31516837 (25 bp)
GATGTGCATCTTCCAATTCCAAGTT
LOC_Os02g51450
Os.52106.2.S1_at--702--7911Chr02:31516930..31516954 (25 bp)
GGTTGATCTGGTTCTCAGCAAATCA
LOC_Os02g51450
Os.52106.2.S1_at--595--971Chr02:31516963..31516987 (25 bp)
AGGAGTGTTCCTCTACGGCATAGAA
LOC_Os02g51450
Os.52106.2.S1_at--148--931Chr02:31517042..31517066 (25 bp)
AGGCAGAGGCTTTCCTATCGTATAC
LOC_Os02g51450
Os.52106.2.S1_at--645--511Chr02:31517058..31517082 (25 bp)
ATCGTATACTAGCATGTTTCTTGGA
LOC_Os02g51450
Os.52106.2.S1_at--170--9591Chr02:31517076..31517100 (25 bp)
TCTTGGATTGCATGCCTACTGTTGC
LOC_Os02g51450
Os.52106.2.S1_at--537--1491Chr02:31517135..31517159 (25 bp)
AGCACTACTCCATATACTTCATTCA
LOC_Os02g51450
Os.52106.2.S1_at--332--331Chr02:31517148..31517172 (25 bp)
ATACTTCATTCACCCGTTTCTAAAT
LOC_Os02g51450
Target Sequence 
AATGGAGGCTTACACTCTAGCTGGCTTCTGGCATGATCAGCGATCACGATGTCCTGATGTGCATCTTCCAATTCCAAGTT
GAACGAGAGAAAGTGAAGAACCATCTGAGCAAAGATATAACTAGATAAATTGCGGGACTAGGGAAGAACACTCTACATAA
GGAGATGGAAAAGGTTGATCTGGTTCTCAGCAAATCATCAGAATGAGGAGTGTTCCTCTACGGCATAGAACAAGTTGCGG
CTGAAGCTTTAGAAGAGGTTATTTTTCAAGCTGTTCAACTGGATAGGCAGAGGCTTTCCTATCGTATACTAGCATGTTTC
TTGGATTGCATGCCTACTGTTGCAAAGCAAAAACTTAGGCAACCCAAGATTAGAAAAAGCACTACTCCATATACTTCATT
CACCCGTTTCTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52106.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis