Browse Element(s) Details


Os.15071.2.S1_s_at

Description gb:BI809899
DB_XREF= gi:15857087
DB_XREF=G005C12
CLONE=G005C12
TID=Os.15071.2
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.15071 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_192703.1 (A.thaliana) H+-transporting ATP synthase-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5147011/11ATP synthase delta chain, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51430Os.11055.1.S1_at11/112+31495160..31506551SEC6, putative, expressed
LOC_Os02g51440OsAffx.30603.3.S1_at11/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51440OsAffx.30603.2.S1_x_at1/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51440OsAffx.30603.4.S1_x_at1/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51450Os.52106.1.S1_at11/112+31515232..31517195mTERF family protein, expressed
LOC_Os02g51450Os.52106.2.S1_at11/112+31515232..31517195mTERF family protein, expressed
LOC_Os02g51460Os.50994.1.S1_at11/112+31517549..31518937mTERF family protein, expressed
LOC_Os02g51470Os.51517.1.A1_s_at11/112+31521055..31522660ATP synthase delta chain, chloroplast precursor, putative, expressed
LOC_Os02g51470Os.15071.2.S1_s_at11/112+31521055..31522660ATP synthase delta chain, chloroplast precursor, putative, expressed
LOC_Os02g51480Os.24663.1.S1_s_at11/112+31523730..31525984pentatricopeptide, putative, expressed
LOC_Os02g51490Os.49186.1.S1_at11/112+31526241..31529003expressed protein
LOC_Os02g51500Os.16541.1.S1_at10/112+31529444..31532901NTGP5, putative, expressed
LOC_Os02g51510OsAffx.24825.1.S1_at11/112+31538227..31538910hypothetical protein
LOC_Os02g51520NANA2+31546653..31552806retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000275cellular_componentproton-transporting ATP synthase complex, catalytic core F(1) (sensu Eukaryota)
GO:0005739cellular_componentmitochondrion
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15071.2.S1_s_at--104--9391Chr02:31521625..31521649 (25 bp)
TCGAGTCGCAGGACCTCGCGCAGAT
LOC_Os02g51470
Os.15071.2.S1_s_at--440--971Chr02:31521634..31521658 (25 bp)
AGGACCTCGCGCAGATCGCGCAGCA
LOC_Os02g51470
Os.15071.2.S1_s_at--657--1531Chr02:31521655..31521679 (25 bp)
AGCAGGTGCAGAATCTCACCGGCGC
LOC_Os02g51470
Os.15071.2.S1_s_at--247--4551Chr02:31521676..31521700 (25 bp)
GCGCGAAGAACGTCCGGGTCAAGAC
LOC_Os02g51470
Os.15071.2.S1_s_at--770--1411Chr02:31521682..31521706 (25 bp)
AGAACGTCCGGGTCAAGACCCGCAT
LOC_Os02g51470
Os.15071.2.S1_s_at--658--7791Chr02:31521692..31521716 (25 bp)
GGTCAAGACCCGCATCGACCCGGAG
LOC_Os02g51470
Os.15071.2.S1_s_at--253--4891Chr02:31521727..31521751 (25 bp)
GCTTCACCATCCAGTACGGCCGCGA
LOC_Os02g51470
Os.15071.2.S1_s_at--866--5751Chr02:31521750..31521774 (25 bp)
GACGGGTCCAGCCTCATCGACATGA
LOC_Os02g51470
Os.15071.2.S1_s_at--688--7791Chr02:31521754..31521778 (25 bp)
GGTCCAGCCTCATCGACATGAGCGT
LOC_Os02g51470
Os.15071.2.S1_s_at--638--9611Chr02:31521763..31521787 (25 bp)
TCATCGACATGAGCGTCCGGAAGCA
LOC_Os02g51470
Os.15071.2.S1_s_at--965--9351Chr02:31521811..31521835 (25 bp)
TCGAGATGCCCGCAGTAACCCTCGA
LOC_Os02g51470
Target Sequence 
TCGAGTCGCAGGACCTCGCGCAGATCGCGCAGCAGGTGCAGAATCTCACCGGCGCGAAGAACGTCCGGGTCAAGACCCGC
ATCGACCCGGAGCTCATCGCCGGCTTCACCATCCAGTACGGCCGCGACGGGTCCAGCCTCATCGACATGAGCGTCCGGAA
GCAGATCGAGGAGATCACCTCCGANTTCGAGATGCCCGCAGTAACCCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15071.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis