Browse Element(s) Details


Os.10530.1.S1_at

Description gb:AK101130.1
DB_XREF= gi:32986339
TID=Os.10530.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.10530 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033026C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033026C08, full insert sequence.
FL= gb:AK101130.1 gb:AK119577.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4338011/11RabGAP/TBC domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43334Os.27716.2.S1_a_at11/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43334Os.27716.1.S1_at10/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43334Os.27482.1.A1_at1/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43350OsAffx.29646.1.S1_x_at11/118+27260376..27263270NC domain-containing protein, putative, expressed
LOC_Os08g43350Os.7601.1.S1_s_at11/118+27260376..27263270NC domain-containing protein, putative, expressed
LOC_Os08g43360Os.57567.1.A1_s_at11/118+27265105..27268352RNA recognition motif family protein, expressed
LOC_Os08g43360Os.57567.1.A1_at2/118+27265105..27268352RNA recognition motif family protein, expressed
LOC_Os08g43370Os.6176.1.S1_at11/118+27270832..27273595Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase family protein, expressed
LOC_Os08g43380Os.10530.1.S1_at11/118+27276133..27281040RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os08g43390Os.17180.1.S1_at11/118+27287682..27289992Cytochrome P450 78A3, putative, expressed
LOC_Os08g43400Os.20403.2.S1_x_at11/118+27302283..27309595Kinesin motor domain containing protein, expressed
LOC_Os08g43400Os.20403.1.S1_s_at11/118+27302283..27309595Kinesin motor domain containing protein, expressed
LOC_Os08g43400Os.52106.1.S1_at1/118+27302283..27309595Kinesin motor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10530.1.S1_at--318--2331Chr08:27280494..27280518 (25 bp)
AAAGATAAGGCTGCATGCCCCTCCA
LOC_Os08g43380
Os.10530.1.S1_at--340--6531Chr08:27280525..27280549 (25 bp)
GATTTGTTGCTCTATGCCATTGCTG
LOC_Os08g43380
Os.10530.1.S1_at--631--71Chr08:27280543..27280567 (25 bp)
ATTGCTGCCTGTGTCCTACAGAAGA
LOC_Os08g43380
Os.10530.1.S1_at--476--1591Chr08:27280637..27280661 (25 bp)
AGCTCGACGTCTGGAGGCTTCTAGA
LOC_Os08g43380
Os.10530.1.S1_at--512--5671Chr08:27280672..27280696 (25 bp)
GACTTGGTGGTTAACCTCCATGACA
LOC_Os08g43380
Os.10530.1.S1_at--980--3071Chr08:27280753..27280777 (25 bp)
AATACCGTGCAAACCTCGGCGAATT
LOC_Os08g43380
Os.10530.1.S1_at--879--3151Chr08:27280774..27280798 (25 bp)
AATTCCTGAGGTGTGCTTTCACCGA
LOC_Os08g43380
Os.10530.1.S1_at--205--10791Chr08:27280823..27280847 (25 bp)
TTGTTTTGTCAACCCGGCATAAAGA
LOC_Os08g43380
Os.10530.1.S1_at--205--2331Chr08:27280843..27280867 (25 bp)
AAAGAACTCGTTCCGGGCATAGGAG
LOC_Os08g43380
Os.10530.1.S1_at--360--6531Chr08:27280889..27280913 (25 bp)
GATTTGCTATATACCTCACCAAGGC
LOC_Os08g43380
Os.10530.1.S1_at--289--8731Chr08:27280922..27280946 (25 bp)
TGTAAACCGTACATTGTTTGCCGGG
LOC_Os08g43380
Target Sequence 
AAAGATAAGGCTGCATGCCCCTCCAACTGATGATTTGTTGCTCTATGCCATTGCTGCCTGTGTCCTACAGAAGAGGAAGC
TCATAATTGAGAGGTATAGCAGCATGGATGAGATACTCAGGGAGTGCAACAGCATGGCTGGGCAGCTCGACGTCTGGAGG
CTTCTAGATGATGCACATGACTTGGTGGTTAACCTCCATGACAAAATNTGATGCATCTGCATTCTTTGGCAGATCGATTG
TTAGAATTTAGAGTTACAAAATACCGTGCAAACCTCGGCGAATTCCTGAGGTGTGCTTTCACCGAAAGGTGATCTTTTTT
TTTTNACCTGTTGTTTTGTCAACCCGGCATAAAGAACTCGTTCCGGGCATAGGAGAATGCGGTACTTAGCAAAGCTGATT
TGCTATATACCTCACCAAGGCACTGGCAATGTAAACCGTACATTGTTTGCCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis