Browse Element(s) Details


OsAffx.29646.1.S1_x_at

Description tigr:9636.m04414
TID=OsAffx.29646.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4335011/11NC domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43300Os.26698.2.S1_at11/118+27232268..27237980UBX domain containing protein, expressed
LOC_Os08g43300Os.52843.1.S1_at1/118+27232268..27237980UBX domain containing protein, expressed
LOC_Os08g43310NANA8+27239947..27240453expressed protein
LOC_Os08g43320Os.48334.1.S1_at11/118+27243191..27246096membrane protein, putative, expressed
LOC_Os08g43334Os.27716.2.S1_a_at11/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43334Os.27716.1.S1_at10/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43334Os.27482.1.A1_at1/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43350OsAffx.29646.1.S1_x_at11/118+27260376..27263270NC domain-containing protein, putative, expressed
LOC_Os08g43350Os.7601.1.S1_s_at11/118+27260376..27263270NC domain-containing protein, putative, expressed
LOC_Os08g43360Os.57567.1.A1_s_at11/118+27265105..27268352RNA recognition motif family protein, expressed
LOC_Os08g43360Os.57567.1.A1_at2/118+27265105..27268352RNA recognition motif family protein, expressed
LOC_Os08g43370Os.6176.1.S1_at11/118+27270832..27273595Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase family protein, expressed
LOC_Os08g43380Os.10530.1.S1_at11/118+27276133..27281040RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os08g43390Os.17180.1.S1_at11/118+27287682..27289992Cytochrome P450 78A3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29646.1.S1_x_at--69--7111Chr08:27260891..27260915 (25 bp)
GTCACCGCCGGGATGTACTGCGCCG
LOC_Os08g43350
OsAffx.29646.1.S1_x_at--640--9151Chr08:27260873..27260897 (25 bp)
TGCGCCGGCAGGTACATCACCGACA
LOC_Os08g43350
OsAffx.29646.1.S1_x_at--991--1051Chr08:27260818..27260842 (25 bp)
AGGTGGAGAACCTGTCGGCGCATCT
LOC_Os08g43350
OsAffx.29646.1.S1_x_at--649--4651Chr08:27260787..27260811 (25 bp)
GCGTCGCGCCAAAGCCGAGGAAGAA
LOC_Os08g43350
OsAffx.29646.1.S1_x_at--761--2411Chr08:27260751..27260775 (25 bp)
AAAACAGCAGCCTTCATCACATGAT
LOC_Os08g43350
OsAffx.29646.1.S1_x_at--340--7091Chr08:27260720..27260744 (25 bp)
GTCAAGAAGAGTTTACTTCCTCTCA
LOC_Os08g43350
OsAffx.29646.1.S1_x_at--739--9731Chr08:27260557..27260581 (25 bp)
TAATCAAGCATTCGCTGTCTCTGTG
LOC_Os08g43350
OsAffx.29646.1.S1_x_at--456--9351Chr08:27260546..27260570 (25 bp)
TCGCTGTCTCTGTGTGTGTGTGATA
LOC_Os08g43350
OsAffx.29646.1.S1_x_at--1091--471Chr08:27260512..27260536 (25 bp)
ATCTGATCATGAATTGGGTGTGCCA
LOC_Os08g43350
OsAffx.29646.1.S1_x_at--161--8051Chr08:27260486..27260510 (25 bp)
GGAGATTGGATTGCTGTACCACTAT
LOC_Os08g43350
OsAffx.29646.1.S1_x_at--835--9512Chr08:27260406..27260430 (25 bp)
TCTCTCTCTCTTTTTCATTTGAACC
LOC_Os08g43350
Target Sequence 
GTCACCGCCGGGATGTACTGCGCCGGCAGGTACATCACCGACATCGGGGTGAGGAAGGACGTCGTCAAGGTGGAGGTGGA
GAACCTGTCGGCGCATCTTGGCTGGCGTCGCGCCAAAGCCGAGGAAGAAATGGCCATGAAAAAACAGCAGCCTTCATCAC
ATGATACTAAGGTCAAGAAGAGTTTACTTCCTCTCAAGAGAAAACGTGACAATTTCTGCGAAATTATTACGAGCTGAAAT
TCTACTACAATTTGTATGGTTTTGTGTGGATAGGTTTTGGAGTTAAAATGCAATAAGTCCTGGAAATATATGAAGCGTCA
AGTGTGCTTTGATTTAATCAAGCATTCGCTGTCTCTGTGTGTGTGTGATAGATAGATCGATCTGATCATGAATTGGGTGT
GCCAAGGAGATTGGATTGCTGTACCACTATAGTATTATAGTCAGAAAATTTACTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTTTTTCATTTGAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29646.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis