Browse Element(s) Details


Os.27716.1.S1_at

Description gb:AY344484.1
DB_XREF= gi:33591097
TID=Os.27716.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27716 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) heat shock factor RHSF2 mRNA, complete cds.
PROD=heat shock factor RHSF2
FL= gb:AY344484.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4333410/11HSF-type DNA-binding domain containing protein, expressed
LOC_Os07g340701/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43270NANA8+27224572..27225566BAG domain-containing protein, putative, expressed
LOC_Os08g43280OsAffx.6123.1.S1_at9/118+27227254..27230479hypothetical protein
LOC_Os08g43290Os.5780.1.S1_at11/118+27231322..27231994Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g43300Os.26698.2.S1_at11/118+27232268..27237980UBX domain containing protein, expressed
LOC_Os08g43300Os.52843.1.S1_at1/118+27232268..27237980UBX domain containing protein, expressed
LOC_Os08g43310NANA8+27239947..27240453expressed protein
LOC_Os08g43320Os.48334.1.S1_at11/118+27243191..27246096membrane protein, putative, expressed
LOC_Os08g43334Os.27716.2.S1_a_at11/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43334Os.27716.1.S1_at10/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43334Os.27482.1.A1_at1/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43350OsAffx.29646.1.S1_x_at11/118+27260376..27263270NC domain-containing protein, putative, expressed
LOC_Os08g43350Os.7601.1.S1_s_at11/118+27260376..27263270NC domain-containing protein, putative, expressed
LOC_Os08g43360Os.57567.1.A1_s_at11/118+27265105..27268352RNA recognition motif family protein, expressed
LOC_Os08g43360Os.57567.1.A1_at2/118+27265105..27268352RNA recognition motif family protein, expressed
LOC_Os08g43370Os.6176.1.S1_at11/118+27270832..27273595Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase family protein, expressed
LOC_Os08g43380Os.10530.1.S1_at11/118+27276133..27281040RabGAP/TBC domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0016020cellular_componentmembrane
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27716.1.S1_at--87--7391NONE
GTGACCAAGACGAGTGTGGAGCCAA
NONE
Os.27716.1.S1_at--1144--4371Chr08:27248457..27248481 (25 bp)
CCAAGCCGAGCAACCAGGACAAGAA
LOC_Os08g43334
Os.27716.1.S1_at--593--5931Chr08:27248453..27248474 (22 bp)
GAGCAACCAGGACAAGAAAGATCTT
LOC_Os08g43334
Os.27716.1.S1_at--413--2811Chr08:27248214..27248457 (25 bp)
AAGATCTTCTTCGACGGTGGGTTGT
LOC_Os08g43334
Os.27716.1.S1_at--283--10631Chr08:27248205..27248229 (25 bp)
TTCGACGGTGGGTTGTTCTGATTTC
LOC_Os08g43334
Os.27716.1.S1_at--882--1912Chr08:27248201..27248225 (25 bp)
ACGGTGGGTTGTTCTGATTTCTGAA
LOC_Os08g43334
Os.27716.1.S1_at--435--6531Chr08:27248186..27248210 (25 bp)
GATTTCTGAATCTCTGCAACTGCAC
LOC_Os08g43334
Os.27716.1.S1_at--473--9471Chr08:27248174..27248198 (25 bp)
TCTGCAACTGCACGGCCGTCAAGTT
LOC_Os08g43334
Os.27716.1.S1_at--365--4731Chr08:27248143..27248167 (25 bp)
GCTGTGCAAGAATGGCGGCGCGACC
LOC_Os08g43334
Os.27716.1.S1_at--876--1811Chr08:27248000..27248024 (25 bp)
ACCCAGGCCACGACGGTGAGATCTT
LOC_Os08g43334
Os.27716.1.S1_at--400--5751Chr08:27247989..27248013 (25 bp)
GACGGTGAGATCTTAGGGTTTGTTT
LOC_Os08g43334
Target Sequence 
GTGACCAAGACGAGTGTGGAGCCAAGCCGAGCAACCAGGACAAGAAAGATCTTCTTCGACGGTGGGTTGTTCTGATTTCT
GAATCTCTGCAACTGCACGGCCGTCAAGTTGTGGGGGCTGTGCAAGAATGGCGGCGCGACCGTCGTGGCCATCGACGGCC
TCCTGCAGGTCACGTTCAGTTGCGTACTTGCGTCAACAACCTCCTGGTCACCGGCGCCGGCACCCTCGACGCTGGACGAG
AGTACGAGACCAACTCCCTACCCAGGCCACGACGGTGAGATCTTAGGGTTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27716.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis