Browse Element(s) Details


Os.48334.1.S1_at

Description gb:AK061056.1
DB_XREF= gi:32971074
TID=Os.48334.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.48334 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-205-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-H06, full insert sequence.
FL= gb:AK061056.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4332011/11membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43260OsAffx.17493.1.S1_at11/118+27219829..27220859hypothetical protein
LOC_Os08g43270NANA8+27224572..27225566BAG domain-containing protein, putative, expressed
LOC_Os08g43280OsAffx.6123.1.S1_at9/118+27227254..27230479hypothetical protein
LOC_Os08g43290Os.5780.1.S1_at11/118+27231322..27231994Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g43300Os.26698.2.S1_at11/118+27232268..27237980UBX domain containing protein, expressed
LOC_Os08g43300Os.52843.1.S1_at1/118+27232268..27237980UBX domain containing protein, expressed
LOC_Os08g43310NANA8+27239947..27240453expressed protein
LOC_Os08g43320Os.48334.1.S1_at11/118+27243191..27246096membrane protein, putative, expressed
LOC_Os08g43334Os.27716.2.S1_a_at11/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43334Os.27716.1.S1_at10/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43334Os.27482.1.A1_at1/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43350OsAffx.29646.1.S1_x_at11/118+27260376..27263270NC domain-containing protein, putative, expressed
LOC_Os08g43350Os.7601.1.S1_s_at11/118+27260376..27263270NC domain-containing protein, putative, expressed
LOC_Os08g43360Os.57567.1.A1_s_at11/118+27265105..27268352RNA recognition motif family protein, expressed
LOC_Os08g43360Os.57567.1.A1_at2/118+27265105..27268352RNA recognition motif family protein, expressed
LOC_Os08g43370Os.6176.1.S1_at11/118+27270832..27273595Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48334.1.S1_at--1077--491Chr08:27243978..27244002 (25 bp)
ATCGGGATACTACCTCACGCTGATA
LOC_Os08g43320
Os.48334.1.S1_at--576--3351Chr08:27243963..27243987 (25 bp)
CACGCTGATAACTTTGCACACATTG
LOC_Os08g43320
Os.48334.1.S1_at--682--5731Chr08:27243928..27243952 (25 bp)
GACTGGATTCCTTCTTGGGTTTGTC
LOC_Os08g43320
Os.48334.1.S1_at--1084--10811Chr08:27243908..27243932 (25 bp)
TTGTCCTGCTGGCAAGACCTCAATT
LOC_Os08g43320
Os.48334.1.S1_at--965--5451Chr08:27243873..27243897 (25 bp)
GAACGTCATGAGTTGCCTCAGACTA
LOC_Os08g43320
Os.48334.1.S1_at--683--3631Chr08:27243589..27243817 (25 bp)
CTTGCTGCTAGTTGGGTTTGTGATT
LOC_Os08g43320
Os.48334.1.S1_at--769--2371Chr08:27243532..27243556 (25 bp)
AAACGATGGTTGTCACTGGTGCCAC
LOC_Os08g43320
Os.48334.1.S1_at--740--9071Chr08:27243461..27243485 (25 bp)
TGCTTCAGAATTCCGTTAGCTCTTC
LOC_Os08g43320
Os.48334.1.S1_at--980--10211Chr08:27243423..27243447 (25 bp)
TATTCTTCGGGAACCATTTTCAAGC
LOC_Os08g43320
Os.48334.1.S1_at--572--5211Chr08:27243356..27243380 (25 bp)
GAATTCTGCCCTTTCCAAAGTGTAG
LOC_Os08g43320
Os.48334.1.S1_at--1010--3852Chr03:25791404..25791424 (21 bp)
CTGTTTATTTCAGCCCAACTCCATA
NONE
Target Sequence 
ATCGGGATACTACCTCACGCTGATAACTTTGCACACATTGGTGGATTTGTGACTGGATTCCTTCTTGGGTTTGTCCTGCT
GGCAAGACCTCAATTTGGTTGGATGGAACGTCATGAGTTGCCTCAGACTAATCAACCACGAAAGTACAGAGCATACCAGT
ATGTTTTGTGGGCTGTTGCACTCTTCTTGCTGCTAGTTGGGTTTGTGATTGCCCTGGTGATGCTTTTCAAGGGGAAGAAT
GGAAACGATGGTTGTCACTGGTGCCACTACCTNAACTGCATACCAACATCCAGATGGAAGTGCAGTACTTAGATGCTTCA
GAATTCCGTTAGCTCTTCTCCAAATTACAAATATTCTTCGGGAACCATTTTCAAGCTTGTGTGCTTGTAGATATCTACAA
GAAATTTGCCACAGAGTCGAATTCTGCCCTTTCCAAAGTGTAGTACAATTTTCTGCTTTGTAATTTGAGATTGTAACAGC
TGTTTATTTCAGCCCAACTCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48334.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis