Browse Element(s) Details


OsAffx.6123.1.S1_at

Description tigr:9636.m04406
TID=OsAffx.6123.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g432809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43250OsAffx.17492.1.S1_at11/118+27212451..27214207MATE efflux family protein, expressed
LOC_Os08g43260OsAffx.17493.1.S1_at11/118+27219829..27220859hypothetical protein
LOC_Os08g43270NANA8+27224572..27225566BAG domain-containing protein, putative, expressed
LOC_Os08g43280OsAffx.6123.1.S1_at9/118+27227254..27230479hypothetical protein
LOC_Os08g43290Os.5780.1.S1_at11/118+27231322..27231994Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g43300Os.26698.2.S1_at11/118+27232268..27237980UBX domain containing protein, expressed
LOC_Os08g43300Os.52843.1.S1_at1/118+27232268..27237980UBX domain containing protein, expressed
LOC_Os08g43310NANA8+27239947..27240453expressed protein
LOC_Os08g43320Os.48334.1.S1_at11/118+27243191..27246096membrane protein, putative, expressed
LOC_Os08g43334Os.27716.2.S1_a_at11/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43334Os.27716.1.S1_at10/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43334Os.27482.1.A1_at1/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6123.1.S1_at--797--7091Chr08:27227890..27227914 (25 bp)
GTCAGCGAGAGCTGCACTATCTTCT
LOC_Os08g43280
OsAffx.6123.1.S1_at--1138--2011Chr08:27227905..27227929 (25 bp)
ACTATCTTCTTCCTCGGGCAAGGGA
LOC_Os08g43280
OsAffx.6123.1.S1_at--583--8872Chr08:27228009..27228033 (25 bp)
TGATGTTCTTTGCTTCGCGAGAGGA
LOC_Os08g43280
OsAffx.6123.1.S1_at--496--991NONE
AGGATCGCGCACTGAACTCTCAAGT
NONE
OsAffx.6123.1.S1_at--444--6291Chr08:27228724..27228748 (25 bp)
GATGTTGCTGTTCCTTTCACTGTTC
LOC_Os08g43280
OsAffx.6123.1.S1_at--432--1971Chr08:27228742..27228766 (25 bp)
ACTGTTCATCGCTTTGGTGTGTATC
LOC_Os08g43280
OsAffx.6123.1.S1_at--110--7471Chr08:27228758..27228782 (25 bp)
GTGTGTATCTCTGGTGGTTATGGTA
LOC_Os08g43280
OsAffx.6123.1.S1_at--676--3091NONE
AATTTAACTCCACACGAATCGCACT
NONE
OsAffx.6123.1.S1_at--650--3051Chr08:27229484..27229702 (25 bp)
AATCTGAACGGCCTGATCCAGTGGC
LOC_Os08g43280
OsAffx.6123.1.S1_at--1090--1071Chr08:27229697..27229721 (25 bp)
AGTGGCCACCGCACATGGAGAATTT
LOC_Os08g43280
OsAffx.6123.1.S1_at--525--5871Chr08:27229743..27229764 (22 bp)
GAGCCGGAATTCAGACCGCTGGCGA
LOC_Os08g43280
Target Sequence 
GTCAGCGAGAGCTGCACTATCTTCTTCCTCGGGCAAGGGAGGCCACCGACAGCCGGGGCACACGTGGAGCACGGCGACGC
GTCCACGTCGGCGCGCACCCACGTCCTCCATCACAAGGATGATGTTCTTTGCTTCGCGAGAGGATCGCGCACTGAACTCT
CAAGTCTGAAGGATGTTGCTGTTCCTTTCACTGTTCATCGCTTTGGTGTGTATCTCTGGTGGTTATGGTATAAAGTACAC
AAAAGAACCAGGAGAAAAACCGCACCAAAAAGATCGTTTTCGTTTGAGATTTCGATAGGTGAAATCGTGAAAGCATCAAA
GGCACCTACCAATTTAACTCCACACGAATCGCACTCGAAGAGCATATATAAATACAATCTGAACGGCCTGATCCAGTGGC
CACCGCACATGGAGAATTTCTTTCCGGGAAAGGATGAGCCGAGCCGGAATTCAGACCGCTGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis