Browse Element(s) Details


OsAffx.6124.1.S1_at

Description tigr:9636.m04422
TID=OsAffx.6124.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4342011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43400Os.20403.2.S1_x_at11/118+27302283..27309595Kinesin motor domain containing protein, expressed
LOC_Os08g43400Os.20403.1.S1_s_at11/118+27302283..27309595Kinesin motor domain containing protein, expressed
LOC_Os08g43400Os.52106.1.S1_at1/118+27302283..27309595Kinesin motor domain containing protein, expressed
LOC_Os08g43410NANA8+27325466..27327091expressed protein
LOC_Os08g43420OsAffx.6124.1.S1_at11/118+27327799..27328128hypothetical protein
LOC_Os08g43430Os.54593.1.S1_at11/118+27340904..27342199pepper esterase, putative, expressed
LOC_Os08g43440Os.5369.1.S1_at11/118+27346219..27348261Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6124.1.S1_at--14--3271Chr08:27328068..27328092 (25 bp)
CAAACGCAATTTGTCGCTACACAGC
LOC_Os08g43420
OsAffx.6124.1.S1_at--381--10251Chr08:27328059..27328083 (25 bp)
TTTGTCGCTACACAGCGAGTACCTG
LOC_Os08g43420
OsAffx.6124.1.S1_at--846--9851Chr08:27328051..27328075 (25 bp)
TACACAGCGAGTACCTGCGTGGTTC
LOC_Os08g43420
OsAffx.6124.1.S1_at--780--611Chr08:27327989..27328013 (25 bp)
ATGCTCCCACAGATTTGACGCTGAT
LOC_Os08g43420
OsAffx.6124.1.S1_at--1125--2131Chr08:27327981..27328005 (25 bp)
ACAGATTTGACGCTGATGATGGAGA
LOC_Os08g43420
OsAffx.6124.1.S1_at--1062--1071Chr08:27327957..27327981 (25 bp)
AGGGCAGATCCGGTGGGCGCCTTGC
LOC_Os08g43420
OsAffx.6124.1.S1_at--473--10651Chr08:27327899..27327923 (25 bp)
TTCCTCTGACTTGTCTTGAAGGCGT
LOC_Os08g43420
OsAffx.6124.1.S1_at--573--10751Chr08:27327884..27327908 (25 bp)
TTGAAGGCGTCGATGTCAGTGCTGC
LOC_Os08g43420
OsAffx.6124.1.S1_at--861--4631Chr08:27327878..27327902 (25 bp)
GCGTCGATGTCAGTGCTGCCGCCTT
LOC_Os08g43420
OsAffx.6124.1.S1_at--317--9071Chr08:27327838..27327862 (25 bp)
TGCTTTCCTTGTCTACCCTGGAGAG
LOC_Os08g43420
OsAffx.6124.1.S1_at--992--10791Chr08:27327830..27327854 (25 bp)
TTGTCTACCCTGGAGAGGACGAAGA
LOC_Os08g43420
Target Sequence 
CAAACGCAATTTGTCGCTACACAGCGAGTACCTGCGTGGTTCCCCTTCCCCACCGCGCTTGCTGCCGCTCGGCACCGGCA
TGCTCCCACAGATTTGACGCTGATGATGGAGAGGGCAGATCCGGTGGGCGCCTTGCCGCTACCACCGCCACTTTCCTACC
GTTTTCCTCTTCCTCTGACTTGTCTTGAAGGCGTCGATGTCAGTGCTGCCGCCTTCGCCGCTTCCCCCGCTGCTTTCCTT
GTCTACCCTGGAGAGGACGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis