Browse Element(s) Details


Os.5369.1.S1_at

Description gb:AK103567.1
DB_XREF= gi:32988776
TID=Os.5369.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5369 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033132M06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132M06, full insert sequence.
FL= gb:AK103567.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4344011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43410NANA8+27325466..27327091expressed protein
LOC_Os08g43420OsAffx.6124.1.S1_at11/118+27327799..27328128hypothetical protein
LOC_Os08g43430Os.54593.1.S1_at11/118+27340904..27342199pepper esterase, putative, expressed
LOC_Os08g43440Os.5369.1.S1_at11/118+27346219..27348261Cytochrome P450 family protein, expressed
LOC_Os08g43450Os.52913.1.A1_at11/118+27353542..27355955MYB-like protein 2, putative, expressed
LOC_Os08g43460OsAffx.17496.1.S1_at11/118+27359553..27361658hypothetical protein
LOC_Os08g43470Os.5563.1.S1_at11/118+27364363..27368225ER lumen protein retaining receptor containing protein, expressed
LOC_Os08g43470OsAffx.30150.5.S1_s_at1/118+27364363..27368225ER lumen protein retaining receptor containing protein, expressed
LOC_Os08g43480Os.7377.1.S1_at11/118+27369446..27372129Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g43490OsAffx.17497.1.S1_s_at11/118+27372890..27375658DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5369.1.S1_at--602--811Chr08:27346768..27346792 (25 bp)
ATGGTGGCCTACTCGCTGGCGATGC
LOC_Os08g43440
Os.5369.1.S1_at--902--9531Chr08:27346614..27346638 (25 bp)
TCTACTCCGCCTAGATACCAAAGGT
LOC_Os08g43440
Os.5369.1.S1_at--202--6971Chr08:27346568..27346592 (25 bp)
GTAGCTAGCTATTCGAAAATGATCT
LOC_Os08g43440
Os.5369.1.S1_at--1116--6411Chr08:27346548..27346572 (25 bp)
GATCTAGCTATTTACTCTCATATGC
LOC_Os08g43440
Os.5369.1.S1_at--336--3771Chr08:27346534..27346558 (25 bp)
CTCTCATATGCATTTTAGCTGTTAT
LOC_Os08g43440
Os.5369.1.S1_at--148--10011Chr08:27346519..27346543 (25 bp)
TAGCTGTTATTTACCGTTTGAGATA
LOC_Os08g43440
Os.5369.1.S1_at--9--3851Chr08:27346457..27346481 (25 bp)
CTGCTAGATGCTGATGTCACTCCAT
LOC_Os08g43440
Os.5369.1.S1_at--1096--1211Chr08:27346399..27346423 (25 bp)
AGTTCAGTTATGTTCGGCTCTGTTC
LOC_Os08g43440
Os.5369.1.S1_at--726--8311Chr08:27346384..27346408 (25 bp)
GGCTCTGTTCATCGGCACGAAACAA
LOC_Os08g43440
Os.5369.1.S1_at--803--2231Chr08:27346363..27346387 (25 bp)
ACAATTTTTCCGAGCTGGTGTGTTA
LOC_Os08g43440
Os.5369.1.S1_at--670--771Chr08:27346330..27346354 (25 bp)
ATGTCCATCTATGCTTTCATCTAGG
LOC_Os08g43440
Target Sequence 
ATGGTGGCCTACTCGCTGGCGATGCTGGTGCAGGCGTTCGACTGGGAGCTGCCGGCCGGCGAGCGGCTGGACCTCGCCGA
GCGGTTCGGCATCGTGATGAAGAAGGCCACGCCGCTGGTCGCCGTGCCCACGCCGAGGNCTCTCCAACCCTCAGCTCTAC
TCCGCCTAGATACCAAAGGTTTTAAATCTCGGGCTATAATTGTAGCTAGCTATTCGAAAATGATCTAGCTATTTACTCTC
ATATGCATTTTAGCTGTTATTTACCGTTTGAGATAATCTACCACAAAATATCTTAGTCTGCTATTTAAAACACTGCTAGA
TGCTGATGTCACTCCATCAATCAAATACACTCAAGTCAAATGTTAGTGAGAGTTCAGTTATGTTCGGCTCTGTTCATCGG
CACGAAACAATTTTTCCGAGCTGGTGTGTTAGCTGGAGAATGTCCATCTATGCTTTCATCTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis