Browse Element(s) Details


OsAffx.17497.1.S1_s_at

Description tigr:9636.m04429
TID=OsAffx.17497.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to DnaJ protein homolog - kidney bean (fragment)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4349011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43440Os.5369.1.S1_at11/118+27346219..27348261Cytochrome P450 family protein, expressed
LOC_Os08g43450Os.52913.1.A1_at11/118+27353542..27355955MYB-like protein 2, putative, expressed
LOC_Os08g43460OsAffx.17496.1.S1_at11/118+27359553..27361658hypothetical protein
LOC_Os08g43470Os.5563.1.S1_at11/118+27364363..27368225ER lumen protein retaining receptor containing protein, expressed
LOC_Os08g43470OsAffx.30150.5.S1_s_at1/118+27364363..27368225ER lumen protein retaining receptor containing protein, expressed
LOC_Os08g43480Os.7377.1.S1_at11/118+27369446..27372129Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g43490OsAffx.17497.1.S1_s_at11/118+27372890..27375658DnaJ domain containing protein, expressed
LOC_Os08g43500Os.53131.1.S1_at11/118+27378353..27380711Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os08g43510OsAffx.17498.1.S1_at11/118+27386665..27388360Thaumatin-like protein 1 precursor, putative, expressed
LOC_Os08g43520OsAffx.19542.3.S1_x_at7/118+27392083..27396305retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g43530OsAffx.17499.1.S1_at11/118+27397415..27399517F-box protein interaction domain containing protein
LOC_Os08g43530Os.50043.1.A1_at1/118+27397415..27399517F-box protein interaction domain containing protein
LOC_Os08g43540Os.7903.1.S1_at10/118+27400407..27404085Proteasome subunit alpha type 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17497.1.S1_s_at--410--6531Chr08:27375383..27375407 (25 bp)
GATTTCTGTCTCTTCACGGCCATGG
LOC_Os08g43490
OsAffx.17497.1.S1_s_at--170--4531Chr08:27375407..27375431 (25 bp)
GCCGCTCACCTCACAAATTTTTAGT
LOC_Os08g43490
OsAffx.17497.1.S1_s_at--27--3311Chr08:27375418..27375442 (25 bp)
CACAAATTTTTAGTTACGGTGATCA
LOC_Os08g43490
OsAffx.17497.1.S1_s_at--470--9671Chr08:27375440..27375464 (25 bp)
TCACCCATGCCTGCCTATGTAAAAA
LOC_Os08g43490
OsAffx.17497.1.S1_s_at--584--9351Chr08:27375484..27375508 (25 bp)
TCGCATCGATCCCTTGTGTATGAAT
LOC_Os08g43490
OsAffx.17497.1.S1_s_at--337--511Chr08:27375488..27375512 (25 bp)
ATCGATCCCTTGTGTATGAATGTAA
LOC_Os08g43490
OsAffx.17497.1.S1_s_at--877--5111Chr08:27375526..27375550 (25 bp)
GACTAGGTAGCGTATTAGGAATCCA
LOC_Os08g43490
OsAffx.17497.1.S1_s_at--1078--3551Chr08:27375564..27375588 (25 bp)
CATCATCATGTACTGTGAATATGTA
LOC_Os08g43490
OsAffx.17497.1.S1_s_at--542--9892Chr08:27375587..27375611 (25 bp)
TACTTACTACTGTATTGTACTAGCG
LOC_Os08g43490
OsAffx.17497.1.S1_s_at--896--3871Chr08:27375596..27375620 (25 bp)
CTGTATTGTACTAGCGTGTTTTGAC
LOC_Os08g43490
OsAffx.17497.1.S1_s_at--1140--9891Chr08:27375604..27375628 (25 bp)
TACTAGCGTGTTTTGACGCGAGGTT
LOC_Os08g43490
Target Sequence 
GATTTCTGTCTCTTCACGGCCATGGCCGCTCACCTCACAAATTTTTAGTTACGGTGATCACCCATGCCTGCCTATGTAAA
AAAAAAGTAAAATCTTCCTCCTCGCATCGATCCCTTGTGTATGAATGTAAAATGCAAAATTGAGACTAGGTAGCGTATTA
GGAATCCAGACTTAACCCAATCATCATCATGTACTGTGAATATGTACTTACTACTGTATTGTACTAGCGTGTTTTGACGC
GAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17497.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis