Browse Element(s) Details


OsAffx.17498.1.S1_at

Description tigr:9636.m04431
TID=OsAffx.17498.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161561 thaumatin-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4351011/11Thaumatin-like protein 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43470Os.5563.1.S1_at11/118+27364363..27368225ER lumen protein retaining receptor containing protein, expressed
LOC_Os08g43470OsAffx.30150.5.S1_s_at1/118+27364363..27368225ER lumen protein retaining receptor containing protein, expressed
LOC_Os08g43480Os.7377.1.S1_at11/118+27369446..27372129Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g43490OsAffx.17497.1.S1_s_at11/118+27372890..27375658DnaJ domain containing protein, expressed
LOC_Os08g43500Os.53131.1.S1_at11/118+27378353..27380711Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os08g43510OsAffx.17498.1.S1_at11/118+27386665..27388360Thaumatin-like protein 1 precursor, putative, expressed
LOC_Os08g43520OsAffx.19542.3.S1_x_at7/118+27392083..27396305retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g43530OsAffx.17499.1.S1_at11/118+27397415..27399517F-box protein interaction domain containing protein
LOC_Os08g43530Os.50043.1.A1_at1/118+27397415..27399517F-box protein interaction domain containing protein
LOC_Os08g43540Os.7903.1.S1_at10/118+27400407..27404085Proteasome subunit alpha type 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17498.1.S1_at--307--891Chr08:27387552..27387576 (25 bp)
AGGCGTTCGGCCGACCTGAGTACTG
LOC_Os08g43510
OsAffx.17498.1.S1_at--836--8411Chr08:27387560..27387584 (25 bp)
GGCCGACCTGAGTACTGCTGCAATG
LOC_Os08g43510
OsAffx.17498.1.S1_at--794--8891Chr08:27387568..27387592 (25 bp)
TGAGTACTGCTGCAATGGCGCCTAC
LOC_Os08g43510
OsAffx.17498.1.S1_at--988--1171Chr08:27387570..27387594 (25 bp)
AGTACTGCTGCAATGGCGCCTACGG
LOC_Os08g43510
OsAffx.17498.1.S1_at--839--5171Chr08:27387579..27387603 (25 bp)
GCAATGGCGCCTACGGCAACCCGGA
LOC_Os08g43510
OsAffx.17498.1.S1_at--872--3931Chr08:27387642..27387666 (25 bp)
CGGCGTGCCCTAAATCCTACAGCTA
LOC_Os08g43510
OsAffx.17498.1.S1_at--135--6371Chr08:27387735..27387866 (25 bp)
GATCCACTCCATCCAGCACATTGAG
LOC_Os08g43510
OsAffx.17498.1.S1_at--699--4351Chr08:27387855..27387878 (24 bp)
CCAGCACATTGAGATTTTGGGCTAA
LOC_Os08g43510
OsAffx.17498.1.S1_at--1146--6511Chr08:27387886..27387910 (25 bp)
GATTTCGATGTGGAACATGAATTGG
LOC_Os08g43510
OsAffx.17498.1.S1_at--567--7591Chr08:27388134..27388158 (25 bp)
GGGAATTCAAAGAACGGATCACGGA
LOC_Os08g43510
OsAffx.17498.1.S1_at--247--9711Chr08:27388140..27388164 (25 bp)
TCAAAGAACGGATCACGGAGACCGA
LOC_Os08g43510
Target Sequence 
AGGCGTTCGGCCGACCTGAGTACTGCTGCAATGGCGCCTACGGCAACCCGGACACCTGCCACCCTTCCCAGTACTCGCAG
CTCTTCAAGTCGGCGTGCCCTAAATCCTACAGCTACGCCTACGACGACGCCACCTCCACCTTCACCTGCAACCACACCGA
TTACACCATCACCTTCTGCCCCCGATCCACTCCATCCAGCACATTGAGATTTTGGGCTAAAATTGGGGATTTCGATGTGG
AACATGAATTGGGGAAAGTAAAGTGGGAATTCAAAGAACGGATCACGGAGACCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis