Browse Element(s) Details


OsAffx.17499.1.S1_at

Description tigr:9636.m04433
TID=OsAffx.17499.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4353011/11F-box protein interaction domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43490OsAffx.17497.1.S1_s_at11/118+27372890..27375658DnaJ domain containing protein, expressed
LOC_Os08g43500Os.53131.1.S1_at11/118+27378353..27380711Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os08g43510OsAffx.17498.1.S1_at11/118+27386665..27388360Thaumatin-like protein 1 precursor, putative, expressed
LOC_Os08g43520OsAffx.19542.3.S1_x_at7/118+27392083..27396305retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g43530OsAffx.17499.1.S1_at11/118+27397415..27399517F-box protein interaction domain containing protein
LOC_Os08g43530Os.50043.1.A1_at1/118+27397415..27399517F-box protein interaction domain containing protein
LOC_Os08g43540Os.7903.1.S1_at10/118+27400407..27404085Proteasome subunit alpha type 7, putative, expressed
LOC_Os08g43550Os.9336.1.S1_at10/118+27415128..27416318Myb-related protein Zm38, putative, expressed
LOC_Os08g43550Os.57514.1.S1_x_at1/118+27415128..27416318Myb-related protein Zm38, putative, expressed
LOC_Os08g43560Os.10609.1.S1_at10/118+27422183..27426504L-ascorbate peroxidase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17499.1.S1_at--1153--9331Chr08:27398142..27398166 (25 bp)
TCGCGTTCGACGTGAAGACCGAGAC
LOC_Os08g43530
OsAffx.17499.1.S1_at--627--8991Chr08:27398154..27398178 (25 bp)
TGAAGACCGAGACGTGGCGCCTCAT
LOC_Os08g43530
OsAffx.17499.1.S1_at--918--8551Chr08:27398358..27398382 (25 bp)
TGGAGGAAGGCAACTCATTCATACT
LOC_Os08g43530
OsAffx.17499.1.S1_at--236--331Chr08:27398378..27398402 (25 bp)
ATACTCAGAGATCTCTACGCATCTG
LOC_Os08g43530
OsAffx.17499.1.S1_at--102--1851Chr08:27398394..27398418 (25 bp)
ACGCATCTGACGTTGCATTCTTCAA
LOC_Os08g43530
OsAffx.17499.1.S1_at--333--3391Chr08:27398419..27398442 (24 bp)
CAGCGTCTACAGAGTGCTGTGGTAT
LOC_Os08g43530
OsAffx.17499.1.S1_at--618--2791Chr08:27399389..27399413 (25 bp)
AAGATAGCGGAAGCTCCACTACGCC
LOC_Os08g43530
OsAffx.17499.1.S1_at--145--1811Chr08:27399409..27399433 (25 bp)
ACGCCACAAGTGCATCCAACAAGTT
LOC_Os08g43530
OsAffx.17499.1.S1_at--258--7331Chr08:27399418..27399442 (25 bp)
GTGCATCCAACAAGTTTTCAAGTTT
LOC_Os08g43530
OsAffx.17499.1.S1_at--1085--1191Chr08:27399438..27399462 (25 bp)
AGTTTGAGTCAGATTTGGTCCCTTT
LOC_Os08g43530
OsAffx.17499.1.S1_at--864--1251Chr08:27399448..27399472 (25 bp)
AGATTTGGTCCCTTTTGAGGAGATA
LOC_Os08g43530
Target Sequence 
TCGCGTTCGACGTGAAGACCGAGACGTGGCGCCTCATCGGCCTGCCGCCGGAGGCCACCACCGAGAAGAGGTGGGCGCGG
AAGAAGGTGGCGGCGGTGGAGGGGAAGCTGTGCCTGGTGGTGGTGGTCGACGAGGAGGTCGAGGTCTGGGTGCTGGCCGG
CTACAGGCAGGAGAGGTGGGAGAAGAAGATGACGGCGAGCTTGACGAGGCTGGCAATGGAGGAAGGCAACTCATTCATAC
TCAGAGATCTCTACGCATCTGACGTTGCATTCTTCAACAGCGTCTACAGAGTGCTGTGGTATGATTTTTTGAGGGGGAAG
ATAGCGGAAGCTCCACTACGCCACAAGTGCATCCAACAAGTTTTCAAGTTTGAGTCAGATTTGGTCCCTTTTGAGGAGAT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis