Browse Element(s) Details


Os.9336.1.S1_at

Description gb:AK060276.1
DB_XREF= gi:32970294
TID=Os.9336.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9336 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-005-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-005-H05, full insert sequence.
FL= gb:AK060276.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4355010/11Myb-related protein Zm38, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43520OsAffx.19542.3.S1_x_at7/118+27392083..27396305retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g43530OsAffx.17499.1.S1_at11/118+27397415..27399517F-box protein interaction domain containing protein
LOC_Os08g43530Os.50043.1.A1_at1/118+27397415..27399517F-box protein interaction domain containing protein
LOC_Os08g43540Os.7903.1.S1_at10/118+27400407..27404085Proteasome subunit alpha type 7, putative, expressed
LOC_Os08g43550Os.9336.1.S1_at10/118+27415128..27416318Myb-related protein Zm38, putative, expressed
LOC_Os08g43550Os.57514.1.S1_x_at1/118+27415128..27416318Myb-related protein Zm38, putative, expressed
LOC_Os08g43560Os.10609.1.S1_at10/118+27422183..27426504L-ascorbate peroxidase 4, putative, expressed
LOC_Os08g43570Os.18310.1.S1_at11/118+27427787..27432339Glycosyl hydrolases family 35 protein, expressed
LOC_Os08g43570OsAffx.25575.1.S1_at1/118+27427787..27432339Glycosyl hydrolases family 35 protein, expressed
LOC_Os08g43580Os.8338.1.S1_at11/118+27432963..27435781Acyl carrier protein III, chloroplast precursor, putative, expressed
LOC_Os08g43590OsAffx.6125.1.S1_at11/118+27436992..27439141hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009611biological_processresponse to wounding
GO:0009800biological_processcinnamic acid biosynthesis
GO:0009892biological_processnegative regulation of metabolism
GO:0010224biological_processresponse to UV-B
GO:0016481biological_processnegative regulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9336.1.S1_at--241--1691Chr08:27415575..27415599 (25 bp)
AGCCTCGGCCTCCAGAAGGAGTGCA
LOC_Os08g43550
Os.9336.1.S1_at--208--3411Chr08:27415477..27415501 (25 bp)
CAGAAGCCTCCCCATGAAATGAAAT
LOC_Os08g43550
Os.9336.1.S1_at--1017--1531Chr08:27415390..27415414 (25 bp)
AGCTAGCTTTGGTTACTGCTTAGTG
LOC_Os08g43550
Os.9336.1.S1_at--860--1971Chr08:27415376..27415400 (25 bp)
ACTGCTTAGTGTTAGTCCTTCTTAA
LOC_Os08g43550
Os.9336.1.S1_at--1062--6411Chr08:27415307..27415331 (25 bp)
GATCTTGTTGATCACTTCCTCCATT
LOC_Os08g43550
Os.9336.1.S1_at--615--6451Chr08:27415298..27415322 (25 bp)
GATCACTTCCTCCATTTTGTGTAAA
LOC_Os08g43550
Os.9336.1.S1_at--916--7431Chr08:27415280..27415304 (25 bp)
GTGTAAATACTGTTCCACTCATACT
LOC_Os08g43550
Os.9336.1.S1_at--481--6691Chr08:27415269..27415293 (25 bp)
GTTCCACTCATACTTAGTTCAGTTG
LOC_Os08g43550
Os.9336.1.S1_at--1156--6611Chr08:27415224..27415248 (25 bp)
GTTGGATGTAAATTTGTTCTCGGTC
LOC_Os08g43550
Os.9336.1.S1_at--991--6711Chr08:27415209..27415233 (25 bp)
GTTCTCGGTCTGAAAATCTATGGTA
LOC_Os08g43550
Os.9336.1.S1_at--485--191NONE
ATTTCACGACCAAGACTAGATCCAG
NONE
Target Sequence 
AGCCTCGGCCTCCAGAAGGAGTGCAAGTGCAGCGGCGGCGGCGNCNGGCNGCCGGCNCCNGGCAANCAACTTCCTCNGGC
CTNCAGGGCTGGCATGCTCGACTTCAGAAGCCTCCCCATGAAATGAAATGATNCCTGCAAACCAANTCCATGNATCGTTA
CACTTTCTCTNTNCTCTTTTGGGTTCTTGATNTTCTTNAGCTAGCTTTGGTTACTGCTTAGTGTTAGTCCTTCTTAATTA
GGATCAGATAGAGGAATACTTCCTTTGGGGAGATGATCAGTGATCTTGTTGATCACTTCCTCCATTTTGTGTAAATACTG
TTCCACTCATACTTAGTTCAGTTGATGATATGGTTATTTAGGTTGTTGGATGTAAATTTGTTCTCGGTCTGAAAATCTAT
GGTATTTGTCATNCCTTGCCGAGAAAAAAATTCTTGTTACTAATTTCACGACCAAGACTAGATCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis