Browse Element(s) Details


Os.18310.1.S1_at

Description gb:AK069066.1
DB_XREF= gi:32979090
TID=Os.18310.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18310 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023065N10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007A22, full insert sequence.
FL= gb:AK069066.1 gb:AK070916.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4357011/11Glycosyl hydrolases family 35 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43540Os.7903.1.S1_at10/118+27400407..27404085Proteasome subunit alpha type 7, putative, expressed
LOC_Os08g43550Os.9336.1.S1_at10/118+27415128..27416318Myb-related protein Zm38, putative, expressed
LOC_Os08g43550Os.57514.1.S1_x_at1/118+27415128..27416318Myb-related protein Zm38, putative, expressed
LOC_Os08g43560Os.10609.1.S1_at10/118+27422183..27426504L-ascorbate peroxidase 4, putative, expressed
LOC_Os08g43570Os.18310.1.S1_at11/118+27427787..27432339Glycosyl hydrolases family 35 protein, expressed
LOC_Os08g43570OsAffx.25575.1.S1_at1/118+27427787..27432339Glycosyl hydrolases family 35 protein, expressed
LOC_Os08g43580Os.8338.1.S1_at11/118+27432963..27435781Acyl carrier protein III, chloroplast precursor, putative, expressed
LOC_Os08g43590OsAffx.6125.1.S1_at11/118+27436992..27439141hypothetical protein
LOC_Os08g43600NANA8+27443333..27443857bZIP transcription factor family protein
LOC_Os08g43609NANA8+27446144..27446343NA
LOC_Os08g43620OsAffx.17500.1.S1_at11/118+27450208..27450715expressed protein
LOC_Os08g43630Os.20177.1.S1_at11/118+27453256..27453905expressed protein
LOC_Os08g43630OsAffx.29648.1.S1_x_at11/118+27453256..27453905expressed protein
LOC_Os08g43640Os.8718.1.S1_at11/118+27455543..2745921526S proteasome non-ATPase regulatory subunit 3, putative, expressed
LOC_Os08g43640OsAffx.16671.1.S1_at1/118+27455543..2745921526S proteasome non-ATPase regulatory subunit 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004565molecular_functionbeta-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18310.1.S1_at--543--9231Chr08:27431820..27431844 (25 bp)
TCCAGTCCGTGGTGTTCGCCAGCTA
LOC_Os08g43570
Os.18310.1.S1_at--803--471Chr08:27431861..27431885 (25 bp)
ATCTGCGGCAACTACACCGTCGGCA
LOC_Os08g43570
Os.18310.1.S1_at--957--1411Chr08:27431919..27431943 (25 bp)
AGAAGGCCTGCATCGGCCGGAAGAC
LOC_Os08g43570
Os.18310.1.S1_at--97--3091Chr08:27432066..27432090 (25 bp)
AATAAGCTAGCCAGCCGCCACATCT
LOC_Os08g43570
Os.18310.1.S1_at--945--10551Chr08:27432094..27432118 (25 bp)
TTCTTGTCTCTCATCAGATTCTCAG
LOC_Os08g43570
Os.18310.1.S1_at--550--10051Chr08:27432120..27432144 (25 bp)
TAGTTAAAGCTTTGACCTGCTGCTG
LOC_Os08g43570
Os.18310.1.S1_at--1021--4151Chr08:27432149..27432173 (25 bp)
CGCCGCTGCTATTGTACTTTGATTG
LOC_Os08g43570
Os.18310.1.S1_at--909--4871Chr08:27432156..27432180 (25 bp)
GCTATTGTACTTTGATTGGTTCCAT
LOC_Os08g43570
Os.18310.1.S1_at--1075--411Chr08:27432183..27432207 (25 bp)
ATCATCGATCTCACTCACTTCACTG
LOC_Os08g43570
Os.18310.1.S1_at--550--631Chr08:27432236..27432260 (25 bp)
ATGCTCAGCTCCTTGTATGCACCAT
LOC_Os08g43570
Os.18310.1.S1_at--521--6911Chr08:27432250..27432274 (25 bp)
GTATGCACCATCGTCCATGGTTTTA
LOC_Os08g43570
Target Sequence 
TCCAGTCCGTGGTGTTCGCCAGCTACGGCAACCCGCTCGGCATCTGCGGCAACTACACCGTCGGCAGCTGCCACGCGCCG
CGNACCAAGGAGGTGGTCGAGAAGGCCTGCATCGGCCGGAAGACCTGCTCCCTCGTCGTCTNCCAGCGAGGTCTACGGCG
GCGACGTCCACTGCCCCGGCACCACCGGCACGCTCGCCGTCCNAGGCCNAAGTGCTCCNAAGAGGCCTCCTCGTTCCGCC
GCCACCGCGCAATAAGCTAGCCAGCCGCCACATCTCTCTTCTTGTCTCTCATCAGATTCTCAGATAGTTAAAGCTTTGAC
CTGCTGCTGCTGCCGCCGCTGCTATTGTACTTTGATTGGTTCCATCCATCATCGATCTCACTCACTTCACTGGGGAATTA
TTTAGGCAAACAATCAATTCATGCTCAGCTCCTTGTATGCACCATCGTCCATGGTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18310.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis