Browse Element(s) Details


OsAffx.16671.1.S1_at

Description tigr:9635.m04131
TID=OsAffx.16671.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4129011/11expressed protein
LOC_Os08g436401/1126S proteasome non-ATPase regulatory subunit 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41250Os.27386.1.S1_at11/117+24718480..24722178POT family protein, expressed
LOC_Os07g41250Os.52355.1.S1_at1/117+24718480..24722178POT family protein, expressed
LOC_Os07g41260Os.15461.1.S1_at11/117+24722867..24726483pentatricopeptide, putative, expressed
LOC_Os07g41270NANA7+24732431..24733084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41280Os.6393.1.S1_at11/117+24735233..247404976-phosphogluconolactonase family protein, expressed
LOC_Os07g41290OsAffx.16671.1.S1_at11/117+24742760..24743414expressed protein
LOC_Os07g41300Os.26596.1.S1_s_at11/117+24745452..24746620Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
LOC_Os07g41300OsAffx.32241.1.S1_x_at7/117+24745452..24746620Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
LOC_Os07g41310Os.9592.1.S1_at11/117+24750092..24753702COBRA-like protein 2 precursor, putative, expressed
LOC_Os07g41320OsAffx.28857.1.S1_at10/117+24753756..24756457Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os07g41330Os.11994.1.S1_s_at11/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.5591.1.S1_at11/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330Os.11994.1.S1_at10/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330Os.33305.1.S1_at4/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.27250.3.S1_x_at1/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.27250.1.S1_x_at1/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41340Os.51451.1.S1_at11/117+24763984..24765018B12D protein, expressed
LOC_Os07g41340OsAffx.5592.1.S1_at1/117+24763984..24765018B12D protein, expressed
LOC_Os07g41350OsAffx.16673.1.S1_s_at11/117+24766403..24767370B12D protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0030163biological_processprotein catabolism
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16671.1.S1_at--1--3711Chr07:24742860..24742884 (25 bp)
CTAGTGACCCTCCTGCTGATTGCAG
LOC_Os07g41290
OsAffx.16671.1.S1_at--275--4751Chr07:24742874..24742898 (25 bp)
GCTGATTGCAGCTCTGCTCTTTCCA
LOC_Os07g41290
OsAffx.16671.1.S1_at--707--10291Chr07:24742893..24742914 (22 bp)
TTTCCAGCTGTTTGCTACGCACATG
LOC_Os07g41290
OsAffx.16671.1.S1_at--111--10291Chr07:24742903..24743081 (25 bp)
TTTGCTACGCACATGTTGAGGCGAA
LOC_Os07g41290
OsAffx.16671.1.S1_at--976--2751Chr07:24743080..24743104 (25 bp)
AAGACAGTGTGCCAGAAGACGGAAT
LOC_Os07g41290
OsAffx.16671.1.S1_at--418--5231Chr07:24743101..24743125 (25 bp)
GAATACGGGTGCACGCAGGAGAAAT
LOC_Os07g41290
OsAffx.16671.1.S1_at--240--5591Chr07:24743121..24743145 (25 bp)
GAAATGCCACCAGATGTGCCTGGGT
LOC_Os07g41290
OsAffx.16671.1.S1_at--458--1951Chr07:24743147..24743171 (25 bp)
ACGGCCGGACGGTAGCATCTCAGTA
LOC_Os07g41290
OsAffx.16671.1.S1_at--873--1531Chr07:24743160..24743184 (25 bp)
AGCATCTCAGTATTGCAGGCATTAT
LOC_Os07g41290
OsAffx.16671.1.S1_at--663--10432Chr07:24743181..24743205 (25 bp)
TTATGATACCCAATGCTGTTGCACT
LOC_Os07g41290
OsAffx.16671.1.S1_at--225--4751Chr07:24743195..24743219 (25 bp)
GCTGTTGCACTTATGAGCTTCAAGC
LOC_Os07g41290
Target Sequence 
CTAGTGACCCTCCTGCTGATTGCAGCTCTGCTCTTTCCAGCTGTTTGCTACGCACATGTTGAGGCGAAGACAGTGTGCCA
GAAGACGGAATACGGGTGCACGCAGGAGAAATGCCACCAGATGTGCCTGGGTGACGGCCGGACGGTAGCATCTCAGTATT
GCAGGCATTATGATACCCAATGCTGTTGCACTTATGAGCTTCAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16671.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis