Browse Element(s) Details


Os.52355.1.S1_at

Description gb:AK066601.1
DB_XREF= gi:32976619
TID=Os.52355.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52355 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013068N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013068N19, full insert sequence.
FL= gb:AK066601.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g412501/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41230Os.53244.1.A1_at11/117+24697800..24701979hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g41240OsAffx.28856.1.S1_x_at11/117+24712147..24713930Cytochrome P450 78A4, putative, expressed
LOC_Os07g41240OsAffx.14730.1.S1_x_at1/117+24712147..24713930Cytochrome P450 78A4, putative, expressed
LOC_Os07g41250Os.27386.1.S1_at11/117+24718480..24722178POT family protein, expressed
LOC_Os07g41250Os.52355.1.S1_at1/117+24718480..24722178POT family protein, expressed
LOC_Os07g41260Os.15461.1.S1_at11/117+24722867..24726483pentatricopeptide, putative, expressed
LOC_Os07g41270NANA7+24732431..24733084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41280Os.6393.1.S1_at11/117+24735233..247404976-phosphogluconolactonase family protein, expressed
LOC_Os07g41290OsAffx.16671.1.S1_at11/117+24742760..24743414expressed protein
LOC_Os07g41300Os.26596.1.S1_s_at11/117+24745452..24746620Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
LOC_Os07g41300OsAffx.32241.1.S1_x_at7/117+24745452..24746620Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52355.1.S1_at--22--252Chr07:24719039..24719058 (20 bp)
ATATATGTGTGTTTCTTGCTCGCCG
LOC_Os07g41250
Os.52355.1.S1_at--647--391Chr06:19700901..19700925 (25 bp)
ATCAGCGTCGGTGGCATGCATGCGT
NONE
Os.52355.1.S1_at--864--4971Chr06:19700918..19700942 (25 bp)
GCATGCGTCCAAGTTGTTTTCCTGA
NONE
Os.52355.1.S1_at--770--1231Chr06:19700929..19700953 (25 bp)
AGTTGTTTTCCTGACTTGCTTCAAT
NONE
Os.52355.1.S1_at--246--2071Chr06:19700942..19700966 (25 bp)
ACTTGCTTCAATTCTTTCCTCAAGG
NONE
Os.52355.1.S1_at--40--5391Chr06:19700984..19701008 (25 bp)
GAAGCAGTCAGTCAGTGACCCTGTT
NONE
Os.52355.1.S1_at--963--10172Chr06:19701103..19701127 (25 bp)
TATAGAGCTAGCAGATCTTTGATCT
NONE
Os.52355.1.S1_at--672--5651Chr06:19701147..19701171 (25 bp)
GACAGATTAGCTTTCTTTTTTCTTG
NONE
Os.52355.1.S1_at--146--3331Chr06:19701228..19701252 (25 bp)
CACTTTGCCATGTGGTGTGCTCCAT
NONE
Os.52355.1.S1_at--596--4791Chr06:19701246..19701270 (25 bp)
GCTCCATTTCTGTTTCTGTTTTGTA
NONE
Os.52355.1.S1_at--120--3131Chr06:19701351..19701374 (24 bp)
AATTAAATCGGTGTGTGCTTGGGAC
NONE
Target Sequence 
ATATATGTGTGTTTCTTGCTCGCCGCTGCTTGGATCAGCGTCGGTGGCATGCATGCGTCCAAGTTGTTTTCCTGACTTGC
TTCAATTCTTTCCTCAAGGCAAATTAAAGGGAAGATGAAGCAGTCAGTCAGTGACCCTGTTAGAAGGCAAACAACAACAG
CTTTGTTTAATTAGCTGAGGTGATGTAGGATCATATCATATCATATCAAACACTTAATACTATTACTCTATAGTCTATAG
AGCTAGCAGATCTTTGATCTAGTGTGTGTGGTGTTGCTTGACAGATTAGCTTTCTTTTTTCTTGTTTCTTTTTTTGTTTT
GTAATCTTCTCTTTTTCTTTATCTTGTTGTTGTTGTTGTCCACTTTGCCATGTGGTGTGCTCCATTTCTGTTTCTGTTTT
GTACATACTTGTGATGGGATGGCAAAATCACAGATCAAAAGCTGTAACTTTATCAGGTTTTGGATCTGGTTGTTTATACA
GCTAATTAAATCGGTGTGTGCTTGGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis