Browse Element(s) Details


OsAffx.14730.1.S1_x_at

Description tigr:9633.m01470
TID=OsAffx.14730.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g412401/11Cytochrome P450 78A4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41230Os.53244.1.A1_at11/117+24697800..24701979hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g41240OsAffx.28856.1.S1_x_at11/117+24712147..24713930Cytochrome P450 78A4, putative, expressed
LOC_Os07g41240OsAffx.14730.1.S1_x_at1/117+24712147..24713930Cytochrome P450 78A4, putative, expressed
LOC_Os07g41250Os.27386.1.S1_at11/117+24718480..24722178POT family protein, expressed
LOC_Os07g41250Os.52355.1.S1_at1/117+24718480..24722178POT family protein, expressed
LOC_Os07g41260Os.15461.1.S1_at11/117+24722867..24726483pentatricopeptide, putative, expressed
LOC_Os07g41270NANA7+24732431..24733084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41280Os.6393.1.S1_at11/117+24735233..247404976-phosphogluconolactonase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010154biological_processfruit development
GO:0004497molecular_functionmonooxygenase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14730.1.S1_x_at--750--7113Chr07:24713073..24713097 (25 bp)
GTCAGACTCCGACATGATCGCTGTT
LOC_Os07g41240
OsAffx.14730.1.S1_x_at--759--531NONE
ATCGCTGTTCTTTGGCGAGATCGAT
NONE
OsAffx.14730.1.S1_x_at--802--3871NONE
CTGTTCTTTGGCGAGATCGATCAAT
NONE
OsAffx.14730.1.S1_x_at--632--9551Chr05:9326125..9326231 (25 bp)
TCTTTGGCGAGATCGATCAATGTCG
NONE
OsAffx.14730.1.S1_x_at--340--4612Chr05:9326213..9326237 (25 bp)
GCGAGATCGATCAATGTCGAAACAA
NONE
OsAffx.14730.1.S1_x_at--372--7732Chr05:9326259..9326283 (25 bp)
GGTGGCAATCAAGCTAGAAAATTGG
NONE
OsAffx.14730.1.S1_x_at--389--2292Chr05:9326679..9326701 (23 bp)
AAAGGTTTCGTAGCTGAAATTGCAT
NONE
OsAffx.14730.1.S1_x_at--434--1611Chr05:9326688..9326712 (25 bp)
AGCTGAAATTGCATGGAACGAGATC
NONE
OsAffx.14730.1.S1_x_at--591--5592Chr05:9326692..9326716 (25 bp)
GAAATTGCATGGAACGAGATCGATC
NONE
OsAffx.14730.1.S1_x_at--742--4991Chr05:9326698..9326722 (25 bp)
GCATGGAACGAGATCGATCAATGTC
NONE
OsAffx.14730.1.S1_x_at--817--1872Chr05:9326705..9326729 (25 bp)
ACGAGATCGATCAATGTCGAAACAA
NONE
Target Sequence 
GTCAGACTCCGACATGATCGCTGTTCTTTGGCGAGATCGATCAATGTCGAAACAAGATTTCGGCAATACTAAAAGGGGTG
GCAATCAAGCTAGAAAATTGGATGGGTTAGAAGAAAAAGGTTTCGTAGCTGAAATTGCATGGAACGAGATCGATCAATGT
CGAAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14730.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis