Browse Element(s) Details


OsAffx.28856.1.S1_x_at

Description tigr:9635.m04126
TID=OsAffx.28856.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=135697 cytochrome P-450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4124011/11Cytochrome P450 78A4, putative, expressed
LOC_Os10g263401/11Cytochrome P450 78A11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41230Os.53244.1.A1_at11/117+24697800..24701979hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g41240OsAffx.28856.1.S1_x_at11/117+24712147..24713930Cytochrome P450 78A4, putative, expressed
LOC_Os07g41240OsAffx.14730.1.S1_x_at1/117+24712147..24713930Cytochrome P450 78A4, putative, expressed
LOC_Os07g41250Os.27386.1.S1_at11/117+24718480..24722178POT family protein, expressed
LOC_Os07g41250Os.52355.1.S1_at1/117+24718480..24722178POT family protein, expressed
LOC_Os07g41260Os.15461.1.S1_at11/117+24722867..24726483pentatricopeptide, putative, expressed
LOC_Os07g41270NANA7+24732431..24733084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41280Os.6393.1.S1_at11/117+24735233..247404976-phosphogluconolactonase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010154biological_processfruit development
GO:0004497molecular_functionmonooxygenase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28856.1.S1_x_at--753--5631Chr07:24713216..24713240 (25 bp)
GACACGGTGGCGATCTTGATGGAGT
LOC_Os07g41240
OsAffx.28856.1.S1_x_at--81--6231Chr07:24713245..24713269 (25 bp)
GATGGCGAGGATGGTGATGCACCCG
LOC_Os07g41240
OsAffx.28856.1.S1_x_at--571--9011Chr07:24713262..24713286 (25 bp)
TGCACCCGGAGATCCAGGCGAAGGC
LOC_Os07g41240
OsAffx.28856.1.S1_x_at--1162--4291Chr07:24713358..24713382 (25 bp)
CCTACATCCAGTCCATCGTGAAGGA
LOC_Os07g41240
OsAffx.28856.1.S1_x_at--864--9231Chr07:24713369..24713393 (25 bp)
TCCATCGTGAAGGAGACGCTGCGCA
LOC_Os07g41240
OsAffx.28856.1.S1_x_at--468--5792Chr07:24713476..24713500 (25 bp)
GACGACGGCGATGGTGAACATGTGG
LOC_Os07g41240
OsAffx.28856.1.S1_x_at--515--5871Chr07:24713531..24713555 (25 bp)
GAGCCGGATGCGTTCCGCCCGGAGC
LOC_Os07g41240
OsAffx.28856.1.S1_x_at--895--8111Chr07:24713572..24713596 (25 bp)
GGACGTCGGCGTGCTCGGCGGCGAC
LOC_Os07g41240
OsAffx.28856.1.S1_x_at--849--4211Chr07:24713626..24713650 (25 bp)
CCGCGTCTGCCCTGGCAGGATGCTG
LOC_Os07g41240
OsAffx.28856.1.S1_x_at--962--3911Chr07:24713637..24713661 (25 bp)
CTGGCAGGATGCTGGCGCTCGCCAC
LOC_Os07g41240
OsAffx.28856.1.S1_x_at--97--1671Chr07:24713736..24713760 (25 bp)
AGCGCCTCGGCATGTCGCTGGAGAT
LOC_Os07g41240
Target Sequence 
GACACGGTGGCGATCTTGATGGAGTGGGTGATGGCGAGGATGGTGATGCACCCGGAGATCCAGGCGAAGGCGCAGGCGGA
GGTGGACGCCGCCGTGGGGGGACGCCGCGGCCGCGTCGCCGACGGCGACGTGGCGAGCCTCCCCTACATCCAGTCCATCG
TGAAGGAGACGCTGCGCATGCACCCGCCGGGCCCGCTCCTGTCGTGGGCGCGCCTCGCCGTGCACGACGCGCGCGTCGGT
GGCCACGCCGTCCCCGCCGGGACGACGGCGATGGTGAACATGTGGGCGATCGCCCACGACGCCGCCGTCTGGCCGGAGCC
GGATGCGTTCCGCCCGGAGCGCTTCTCGGAGGGGGAGGACGTCGGCGTGCTCGGCGGCGACCTCCGCCTCGCGCCGTTCG
GCGCCGGCCGCCGCGTCTGCCCTGGCAGGATGCTGGCGCTCGCCACCGCCCACCTCTGGCTCGCCCAGCTGCTGCACGCC
TTCGACTGGTCCCCCACCGCCGCCGGCGTCGACCTGTCCGAGCGCCTCGGCATGTCGCTGGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28856.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis